Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0271
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0004 - 23397-23401,24015-24054,24895-26007 32 0.37
11_01_0005 - 24998-25002,25616-25655,26496-27608 32 0.37
05_07_0175 - 28164252-28164529,28165381-28166560 30 2.0
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 29 2.6
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 29 3.5
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 29 3.5
05_01_0510 - 4253902-4254032,4254121-4255225 29 3.5
03_01_0081 + 645214-645228,645791-645856,645973-646142,646265-64... 29 3.5
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 3.5
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 29 4.6
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 28 8.0
05_03_0357 - 12916142-12916368,12916540-12916594 28 8.0
03_05_0173 + 21502765-21504216 28 8.0
>12_01_0004 - 23397-23401,24015-24054,24895-26007
Length = 385
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -1
Query: 666 DNPPNQLFLHNSSVELLPM*RAKAQVARSLPFRLRDDSNLHRGGG 532
D+ + LFLH SS E RA A + R++ F D +N H G G
Sbjct: 30 DDHHSSLFLHASSPEADHFLRAAADLHRAMLFFASDPTNAHNGHG 74
>11_01_0005 - 24998-25002,25616-25655,26496-27608
Length = 385
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -1
Query: 666 DNPPNQLFLHNSSVELLPM*RAKAQVARSLPFRLRDDSNLHRGGG 532
D+ + LFLH SS E RA A + R++ F D +N H G G
Sbjct: 30 DDHHSSLFLHASSPEADHFLRAAADLHRAMLFFASDPTNAHNGHG 74
>05_07_0175 - 28164252-28164529,28165381-28166560
Length = 485
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 567 LRDDSNLH--RGGGRSPPTGAGLSTSPSPANKQYT*NNHGYGKLFVQNG 427
LR D ++ GGG+ P TGA L T P + G GKLF QNG
Sbjct: 413 LRPDGHVRGLAGGGQGPRTGARL-TPVIPVTVKAKAVVAGPGKLFTQNG 460
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 612 WATVLRNCCVRTTGWAGYRVPTW 680
W +R+ CV W G+RVP W
Sbjct: 479 WLENIRDWCVSRQHWWGHRVPAW 501
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 29.1 bits (62), Expect = 3.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 612 WATVLRNCCVRTTGWAGYRVPTW 680
W T +++ C+ W G+R+P W
Sbjct: 402 WLTNIKDWCISRQLWWGHRIPVW 424
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 540 GGGRSPPTGAGLSTSPSP 487
GGGR+PP AG S +P P
Sbjct: 56 GGGRAPPRAAGKSPAPPP 73
>05_01_0510 - 4253902-4254032,4254121-4255225
Length = 411
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 579 LPFRLRDDSNLHRGGGR--SP-PTGAGLSTSPSPANKQYT*NNHGYGKL 442
LP D++ + GGG SP PT A S PSPA+ NH KL
Sbjct: 34 LPASRSADASAYPGGGAASSPTPTTARSSPKPSPASSTAARTNHAAPKL 82
>03_01_0081 +
645214-645228,645791-645856,645973-646142,646265-646319,
646434-646499,646604-646687,647091-647168,647425-647508,
648000-648302,648402-648572,649098-649288,649406-649808,
650368-650619,650696-651196,651306-651403,651810-651911,
652016-652178
Length = 933
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 612 WATVLRNCCVRTTGWAGYRVPTW 680
W +R+ CV W G+RVP W
Sbjct: 429 WLANIRDWCVSRQLWWGHRVPAW 451
>01_05_0553 +
23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 248 SKSSQLKNSCHSFYFSPPCQLQLCQFSC 331
S +L N C SFY+ C+ LC C
Sbjct: 403 SMHKKLVNDCDSFYWQTSCEEYLCDLLC 430
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 612 WATVLRNCCVRTTGWAGYRVPTW 680
W +R+ C+ W G+RVP W
Sbjct: 542 WLANIRDWCISRQLWWGHRVPAW 564
>10_08_0568 +
18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 612 WATVLRNCCVRTTGWAGYRVPTW 680
W +R+ C+ W G+R+P W
Sbjct: 507 WLENIRDWCISRQLWWGHRIPAW 529
>05_03_0357 - 12916142-12916368,12916540-12916594
Length = 93
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -1
Query: 570 RLRDDSNLHRGGGRSPPTGAGLSTSPSP 487
R RDD L RG RSP G +T+PSP
Sbjct: 17 RHRDDRRL-RGNPRSPWDSKGSATAPSP 43
>03_05_0173 + 21502765-21504216
Length = 483
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 558 DSNLHRGGGRSPPTGAGLSTSPSPANKQ 475
+SN + GGGR+ P +P+PA Q
Sbjct: 332 NSNQNSGGGRTGPQPVAAGAAPNPAGNQ 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,176,180
Number of Sequences: 37544
Number of extensions: 355097
Number of successful extensions: 1028
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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