Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0271
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33488| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_36363| Best HMM Match : ANATO (HMM E-Value=3.6)                     28   8.2  
SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_33488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  YKDNHIENIAGPSCCLIFLFFHISV*FRGY 161
           YKD     +A PSC L+FL F + V FR Y
Sbjct: 139 YKDTRRFPLAAPSCALLFLPFGLPVSFRCY 168


>SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
 Frame = +2

Query: 434 WTNNFPYP*LFQVYCLFAGEGLVLNPAP---VGGDXXXXXXXXXXXXNLKGRDRATCAFA 604
           + N   YP LF V  +F      LNPA    V  D              + R   T +FA
Sbjct: 332 FVNQTYYPILFFVTIIFTAAYASLNPALYSIVSADFRSSLRSLFRKSVDRIRSITTSSFA 391

Query: 605 RYMGNSSTELLCKNN--WLGGLSR 670
           R MG+S+T L   N    LGG  R
Sbjct: 392 REMGHSTTILAPMNGAALLGGADR 415


>SB_36363| Best HMM Match : ANATO (HMM E-Value=3.6)
          Length = 208

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -3

Query: 628 RRTVAHVARKSAGSAVSPLQVTGRQ*PSPGGREVASYRGRVEHKSFSGKQTIYLKQSWIW 449
           R  +    R   G AV  L       P P   +    R  V   ++SG++ +++ + WI+
Sbjct: 133 RNKITKALRAPKGIAVQRLPGKAHLWPQPMASQRKGGR-TVTISTYSGRKRVFIPKGWIF 191

Query: 448 KIICPKRYF 422
             I P R +
Sbjct: 192 CTISPARCY 200


>SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 640 TQQFRRTVAHVARKSAGSAVSPLQVTGRQ*PSPGGREVASYRGRVEHK 497
           T   RRT AH +R S  S+ +  + + R  PS   R V +  G   HK
Sbjct: 18  TPDLRRTAAHGSRNSVRSSRAAARSSWRVTPSGLIRPVHAMNGTTSHK 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,771,895
Number of Sequences: 59808
Number of extensions: 417405
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)