Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0271
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590989-2|CAH70606.1| 1438|Homo sapiens patched domain containi...    30   6.8  
AL031735-1|CAI22474.1| 1438|Homo sapiens patched domain containi...    30   6.8  
AB037758-1|BAA92575.1| 1438|Homo sapiens KIAA1337 protein protein.     30   6.8  

>AL590989-2|CAH70606.1| 1438|Homo sapiens patched domain containing
           2 protein.
          Length = 1438

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 585 RSLPFRL-RDDSNLHRGGGRSPPTGAGLSTSPS 490
           RS P RL R D +  RGG R PPT   LS +P+
Sbjct: 4   RSFPLRLPRGDESAQRGG-RRPPTLCALSPAPA 35


>AL031735-1|CAI22474.1| 1438|Homo sapiens patched domain containing
           2 protein.
          Length = 1438

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 585 RSLPFRL-RDDSNLHRGGGRSPPTGAGLSTSPS 490
           RS P RL R D +  RGG R PPT   LS +P+
Sbjct: 4   RSFPLRLPRGDESAQRGG-RRPPTLCALSPAPA 35


>AB037758-1|BAA92575.1| 1438|Homo sapiens KIAA1337 protein protein.
          Length = 1438

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 585 RSLPFRL-RDDSNLHRGGGRSPPTGAGLSTSPS 490
           RS P RL R D +  RGG R PPT   LS +P+
Sbjct: 4   RSFPLRLPRGDESAQRGG-RRPPTLCALSPAPA 35


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,182,026
Number of Sequences: 237096
Number of extensions: 1976533
Number of successful extensions: 4473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4473
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)