Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0271
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    29   2.4  
Z66499-6|CAA91299.2|  765|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -1

Query: 576 PFRLRDDSNLHRGGGRSPP----TGAGLSTSPSPANKQYT*NN 460
           P  LR+DS   R   RSPP         S SPSP  +Q + +N
Sbjct: 507 PENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSN 549


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -1

Query: 576 PFRLRDDSNLHRGGGRSPP----TGAGLSTSPSPANKQYT*NN 460
           P  LR+DS   R   RSPP         S SPSP  +Q + +N
Sbjct: 507 PENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSN 549


>Z66499-6|CAA91299.2|  765|Caenorhabditis elegans Hypothetical
           protein T01B7.6 protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 158 IYIFIDNFSSKLKFNEPYLYDQQRLGN*LPSKSSQLKNSCHSFYFSPPCQLQ 313
           IYIF    +   KF    +YD  R    +P   + ++N+ H     PP  +Q
Sbjct: 115 IYIFRQEEAHGCKFVAWAIYDDTRKTTSVPPTPTDIQNTSHMKKLGPPTAVQ 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,681
Number of Sequences: 27780
Number of extensions: 312235
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)