Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0271
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.8  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   6.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.4  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 22  YIIFNSNTFIVSTVHTVTKII 84
           +++FN +  IV T  T+T++I
Sbjct: 218 HLMFNRDLIIVQTGCTITRVI 238


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 22  YIIFNSNTFIVSTVHTVTKII 84
           +++FN +  IV T  T+T++I
Sbjct: 218 HLMFNRDLIIVQTGCTITRVI 238


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 399 LICGAKNMKYRFGQIIFHIHDC 464
           ++CG +N++ R   I   I DC
Sbjct: 13  IMCGVQNLRARSVNIFQDIADC 34


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/14 (50%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +3

Query: 45  FHCFNCS-YSYKDN 83
           +HCFNC+ Y  +D+
Sbjct: 607 WHCFNCTQYQIRDH 620


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 543 RGGGRSPPTGAGLSTSPS 490
           +GGG + P    LST P+
Sbjct: 19  KGGGSTTPASPTLSTPPT 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,467
Number of Sequences: 438
Number of extensions: 4156
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)