Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0271
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39000.2 68415.m04795 GCN5-related N-acetyltransferase (GNAT)...    30   1.7  
At2g39000.1 68415.m04794 GCN5-related N-acetyltransferase (GNAT)...    30   1.7  
At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li...    29   2.2  
At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)...    29   2.9  
At2g21590.1 68415.m02568 glucose-1-phosphate adenylyltransferase...    28   6.7  
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc...    27   8.9  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    27   8.9  

>At2g39000.2 68415.m04795 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 228

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -1

Query: 531 RSPPTGAGLSTSPSPANKQYT*NNHGYGKLFVQNGISYF*PHR 403
           RS P G   +T+ SPA+ ++  N++GYG+    +G+S F  HR
Sbjct: 2   RSTPLG---TTAVSPASIKH--NSYGYGRFVSSSGVSNFSIHR 39


>At2g39000.1 68415.m04794 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 291

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -1

Query: 531 RSPPTGAGLSTSPSPANKQYT*NNHGYGKLFVQNGISYF*PHR 403
           RS P G   +T+ SPA+ ++  N++GYG+    +G+S F  HR
Sbjct: 2   RSTPLG---TTAVSPASIKH--NSYGYGRFVSSSGVSNFSIHR 39


>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
           ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
           {Arabidopsis thaliana}
          Length = 1108

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 612 WATVLRNCCVRTTGWAGYRVPTWQAS 689
           W   +R+ C+    W G+R+P W A+
Sbjct: 548 WLENIRDWCISRQLWWGHRIPAWYAT 573


>At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P11931 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (VALRS)
           {Bacillus stearothermophilus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 970

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 612 WATVLRNCCVRTTGWAGYRVPTW 680
           W T +++ C+    W G+R+P W
Sbjct: 455 WLTNIKDWCISRQLWWGHRIPVW 477


>At2g21590.1 68415.m02568 glucose-1-phosphate adenylyltransferase
           large subunit, putative / ADP-glucose pyrophosphorylase,
           putative strong similarity to SP|P55231
          Length = 523

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 237 TNCLQSQANLRTRVTVFTSA---RHVNYNFASFRANFNGGFMKLL 362
           +NC+ S  N    +T F SA   RH+   +     NF GGF+++L
Sbjct: 130 SNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGGGFVEVL 174


>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 387

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 606 RAKAQVARSLPFRLRDDSNLHRGGGRSPPTGAGLSTSPSPANKQ 475
           R +  +++ L  RL    +  RGG  SP      S SPSP  K+
Sbjct: 337 RKRQPISQDLKSRLGPQRSPIRGGRTSPAESLSPSHSPSPPGKR 380


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 606 RAKAQVARSLPFRLRDDSNLHRGGGRSPPTGAGLSTSPSPANKQ 475
           R +  +++ L  RL    +  RGG  SP      S SPSP  K+
Sbjct: 520 RKRQPISQDLKSRLGPQRSPIRGGRTSPAESLSPSHSPSPPGKR 563


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,879,507
Number of Sequences: 28952
Number of extensions: 279917
Number of successful extensions: 728
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)