Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0270
         (395 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q03611 Cluster: Cyclic nucleotide-gated cation channel;...    33   2.7  
UniRef50_Q5W5X8 Cluster: Platelet endothelial cell adhesion mole...    32   3.5  

>UniRef50_Q03611 Cluster: Cyclic nucleotide-gated cation channel;
           n=2; Caenorhabditis|Rep: Cyclic nucleotide-gated cation
           channel - Caenorhabditis elegans
          Length = 733

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = -3

Query: 372 NNVYFW--LINISLLDELFHGTIILQEYLLDK*ARDNIS*NKFWGSTGASRSELNCTASG 199
           +N Y+W  ++ ++ +  L    +I ++   D     + S  +F+  T  S +++ CT + 
Sbjct: 119 DNFYYWTCVVTVAYIYNLLF--VIARQVFNDLIGPSSQSLCRFYNGTLNSTTQVECTYNM 176

Query: 198 VCVAKEQCLYALYDYSRAQKHWTTHFKLI*IIYD 97
           +   KE   Y+ Y      K+W  HF+++ + +D
Sbjct: 177 LTNMKEMPTYSQYPDLGWSKYW--HFRMLWVFFD 208


>UniRef50_Q5W5X8 Cluster: Platelet endothelial cell adhesion
           molecule; n=4; Xenopus|Rep: Platelet endothelial cell
           adhesion molecule - Xenopus laevis (African clawed frog)
          Length = 727

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 254 LF*LMLSRAYLSSKYSCKIIVPWKSSSSNEMLI 352
           ++ L  +R Y S  YSC +IV  K  SSN+++I
Sbjct: 85  IYNLSPARVYKSGTYSCDVIVKGKKKSSNKLII 117


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,637,239
Number of Sequences: 1657284
Number of extensions: 5489818
Number of successful extensions: 9334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9326
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)