Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0270
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   0.48 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   1.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   1.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   1.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   4.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   4.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   5.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 0.48
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 225 SELNCTASGVCVAKEQCLYALYDYSRAQKHWTT 127
           +E N T + +C A  + L+ L  +++   H+T+
Sbjct: 205 NENNTTVNNICQATHKQLFQLVQWAKLVPHFTS 237


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 147 HENSHTRHTNTAPLRHRHH*LYSS 218
           HEN   RH       H+HH L+ +
Sbjct: 111 HENMLLRHHEEVADGHQHHFLHEN 134


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 147 HENSHTRHTNTAPLRHRHH*LYSS 218
           HEN   RH       H+HH L+ +
Sbjct: 111 HENMLLRHHEEVADGHQHHFLHEN 134


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 147 HENSHTRHTNTAPLRHRHH*LYSS 218
           HEN   RH       H+HH L+ +
Sbjct: 111 HENMLLRHHEEVADGHQHHFLHEN 134


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 278 AYLSSKYSCKIIV 316
           AY+  K++CKI++
Sbjct: 391 AYIFGKFACKIMI 403


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 278 AYLSSKYSCKIIV 316
           AY+  K++CKI++
Sbjct: 391 AYIFGKFACKIMI 403


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 278 AYLSSKYSCKIIV 316
           AY+  K++CKI++
Sbjct: 391 AYIFGKFACKIMI 403


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 278 AYLSSKYSCKIIV 316
           AY+  K++CKI++
Sbjct: 391 AYIFGKFACKIMI 403


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 333 DELFHGTIILQEYLL 289
           D+LF GT+ ++E+L+
Sbjct: 160 DDLFIGTLTVKEHLI 174


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 333 DELFHGTIILQEYLL 289
           D+LF GT+ ++E+L+
Sbjct: 160 DDLFIGTLTVKEHLI 174


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 144 VHENSHTRHTNTA 182
           +   +HTRHT T+
Sbjct: 274 IQRRTHTRHTTTS 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,606
Number of Sequences: 336
Number of extensions: 1676
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)