Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0270
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     25   5.6  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    24   9.8  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    24   9.8  

>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 284 LSSKYSCKIIVPWKSSS 334
           L  + +C  IVPWKSSS
Sbjct: 79  LGVQTNCHSIVPWKSSS 95


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 186 KEQCLYALYDYSRAQKHWTTH 124
           KE+C Y   D+    + WT H
Sbjct: 218 KEKCCYVASDFRSEIESWTEH 238


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 366 VYFWLINISLLDELFHGTIILQEYLLDK*ARDN 268
           ++FW+  ++LL + F   +  +E +L    RD+
Sbjct: 520 LFFWIARMALLCKYFSNELPFKEIILHPLVRDS 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,409
Number of Sequences: 5004
Number of extensions: 25277
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)