Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0270
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26)                27   4.2  
SB_13380| Best HMM Match : Spp-24 (HMM E-Value=6.6)                    27   5.5  
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)                 27   7.3  

>SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26)
          Length = 776

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 252 FWGSTGASRSELNCTASGVCVAKEQCLYALYDYSRAQKHWTT 127
           F+GSTG +R++ N T   +     +  +A++ Y+  +  WTT
Sbjct: 518 FYGSTGVNRNKTN-TFQAILTTNGRHSFAIFHYNEIE--WTT 556


>SB_13380| Best HMM Match : Spp-24 (HMM E-Value=6.6)
          Length = 224

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 223 RTELYS*WCLCRKGAVFVCLV 161
           R E Y  WC C +G V VCLV
Sbjct: 148 RMERY--WCACAQGEVAVCLV 166


>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
          Length = 1477

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 279  ARDN-IS*NKFWGST-GASRSELNCTASGVCVAKEQCL 172
            ARD  +   KF G+   A   E NC+  G CVA++ C+
Sbjct: 1360 ARDTCVCDQKFSGNDCSADTCENNCSNHGQCVARDTCV 1397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,893
Number of Sequences: 59808
Number of extensions: 184849
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)