Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0270
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical pr...    33   0.098
D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic nucleoti...    33   0.098
Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical pr...    29   1.6  
DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting prote...    29   1.6  
L23646-10|AAA28037.2|  242|Caenorhabditis elegans Hypothetical p...    27   4.9  
Z81074-1|CAB03044.2|  492|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AF083223-1|AAD03681.1|  492|Caenorhabditis elegans nuclear recep...    27   6.4  
Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical
           protein ZC84.2 protein.
          Length = 733

 Score = 32.7 bits (71), Expect = 0.098
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = -3

Query: 372 NNVYFW--LINISLLDELFHGTIILQEYLLDK*ARDNIS*NKFWGSTGASRSELNCTASG 199
           +N Y+W  ++ ++ +  L    +I ++   D     + S  +F+  T  S +++ CT + 
Sbjct: 119 DNFYYWTCVVTVAYIYNLLF--VIARQVFNDLIGPSSQSLCRFYNGTLNSTTQVECTYNM 176

Query: 198 VCVAKEQCLYALYDYSRAQKHWTTHFKLI*IIYD 97
           +   KE   Y+ Y      K+W  HF+++ + +D
Sbjct: 177 LTNMKEMPTYSQYPDLGWSKYW--HFRMLWVFFD 208


>D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 733

 Score = 32.7 bits (71), Expect = 0.098
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = -3

Query: 372 NNVYFW--LINISLLDELFHGTIILQEYLLDK*ARDNIS*NKFWGSTGASRSELNCTASG 199
           +N Y+W  ++ ++ +  L    +I ++   D     + S  +F+  T  S +++ CT + 
Sbjct: 119 DNFYYWTCVVTVAYIYNLLF--VIARQVFNDLIGPSSQSLCRFYNGTLNSTTQVECTYNM 176

Query: 198 VCVAKEQCLYALYDYSRAQKHWTTHFKLI*IIYD 97
           +   KE   Y+ Y      K+W  HF+++ + +D
Sbjct: 177 LTNMKEMPTYSQYPDLGWSKYW--HFRMLWVFFD 208


>Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical
           protein ZC15.7 protein.
          Length = 633

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 186 KEQCLYALYDYSRAQK-HWTTHFKLI*IIYDFFNTLLELNP 67
           K++ L  L DY++A   HW T +    ++ +   T  +LNP
Sbjct: 74  KKEALLRLTDYNKATVLHWATQYNCKQVVKEIVQTFDKLNP 114


>DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting protein
           MLT-4 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 186 KEQCLYALYDYSRAQK-HWTTHFKLI*IIYDFFNTLLELNP 67
           K++ L  L DY++A   HW T +    ++ +   T  +LNP
Sbjct: 74  KKEALLRLTDYNKATVLHWATQYNCKQVVKEIVQTFDKLNP 114


>L23646-10|AAA28037.2|  242|Caenorhabditis elegans Hypothetical
           protein F44E2.8 protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 227 REAPVEPQNLF*LMLSRAYLSSKYSCKIIVPWKSSSSNE 343
           RE P+ P N+        YLS+ Y C ++V     +S E
Sbjct: 47  RELPIAPDNVVYFNGPTHYLSALYPCTVVVDGNEYNSVE 85


>Z81074-1|CAB03044.2|  492|Caenorhabditis elegans Hypothetical
           protein F32B6.1 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 225 SELNCTASG---VCVAKEQCLYALYDYSRAQKHWTT 127
           SE   +A+G   V  A+E+ L ALY+Y RA K  T+
Sbjct: 396 SESGLSAAGRQIVSAAREKYLSALYNYGRANKCTTS 431


>AF083223-1|AAD03681.1|  492|Caenorhabditis elegans nuclear receptor
           NHR-4 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 225 SELNCTASG---VCVAKEQCLYALYDYSRAQKHWTT 127
           SE   +A+G   V  A+E+ L ALY+Y RA K  T+
Sbjct: 396 SESGLSAAGRQIVSAAREKYLSALYNYGRANKCTTS 431


>Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical
           protein K01D12.2 protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 132 SNVSVHENSHTRHTNTAPLRHRHH*LYSSVLT 227
           +NV + E  H+  T   PLR +HH   +SV T
Sbjct: 262 NNVQLEEIHHSSKTTHHPLRVQHHLQQNSVHT 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,892,574
Number of Sequences: 27780
Number of extensions: 141112
Number of successful extensions: 259
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)