Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0270
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60470.1 68414.m06808 galactinol synthase, putative similar t...    28   2.6  
At2g01810.1 68415.m00111 PHD finger family protein contains Pfam...    26   7.9  

>At1g60470.1 68414.m06808 galactinol synthase, putative similar to
           galactinol synthase GI:5608497 from [Ajuga reptans]
          Length = 334

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 128 VVQCFCARE*SYKAYKHCSFATQTPLAVQFSSDREAPVEP 247
           V+ CFC +  S+       +  Q P  V +  D E+P  P
Sbjct: 143 VMDCFCEKTWSHSLQYSIGYCQQCPEKVTWPEDMESPPPP 182


>At2g01810.1 68415.m00111 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 352 NQHFVTRRTLPRHNNLTRIFTRQIGPG 272
           N   V+ + LP H  L R FTR + PG
Sbjct: 527 NHLTVSCQVLPNHEELLRDFTRLLPPG 553


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,190,757
Number of Sequences: 28952
Number of extensions: 122632
Number of successful extensions: 207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)