Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0269
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    33   0.029
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    33   0.029
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   2.6  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.5  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 153 MGVPQGSILGPFLFLIYINDLPSFIES 233
           +G PQGSI+ P L  IY++ L  FIE+
Sbjct: 419 VGTPQGSIVSPILANIYLHQLDEFIEN 445


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +3

Query: 72  ELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDL----PSFIESRH 239
           +++  +LSG I  +   GN  S    K+G+PQGSIL  FL   Y+ DL     SF + + 
Sbjct: 680 KMLKEHLSGHIVKI---GN--SQYLQKVGIPQGSILSSFLCHFYMEDLIDEYLSFTKKKG 734

Query: 240 EVVLFQMIHLYYLKLN 287
            V+L  +    ++ +N
Sbjct: 735 SVLLRVVDDFLFITVN 750


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 174 WNPEVHPFSTWCLKIYF 124
           WNP+V P + +C +++F
Sbjct: 307 WNPDVRPTAKYCKEVFF 323


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 101 DTNSRCERK*IFRHHVENGCTSGFHFGSFFISNIYK 208
           D NSRC+ K  F  H  N C    H  +  IS+IYK
Sbjct: 350 DCNSRCDTKYHFLGHKCNSC----HSYNTCISSIYK 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,492
Number of Sequences: 5004
Number of extensions: 54981
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)