Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0269
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    29   4.6  
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366...    28   6.1  

>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 96  GRIQTVDVKGNRSSGT--TLKMGVPQGSIL 179
           G ++ +D++GNR +GT  TL +GVP   +L
Sbjct: 167 GELRALDLRGNRLNGTLDTLLLGVPNLKLL 196


>10_08_0485 +
           18235597-18236256,18236353-18236400,18236522-18236644,
           18237062-18237211,18237702-18237873,18237965-18238025,
           18238129-18238237
          Length = 440

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 588 IRMLTNADTARLVYFSYFHSVMSYGHFGYGAMR 686
           ++ LT  D   L+Y S F S +SYG + Y A R
Sbjct: 352 LQELTLNDVLALLYTSIFGSAISYGVYFYNATR 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,042,145
Number of Sequences: 37544
Number of extensions: 316098
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)