Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0269
(691 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 53 3e-07
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 53 3e-07
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 51 1e-06
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 50 3e-06
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 50 3e-06
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 50 3e-06
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 50 3e-06
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 46 4e-05
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 46 6e-05
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 46 6e-05
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 45 1e-04
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 45 1e-04
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 44 1e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 44 3e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 42 6e-04
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 42 0.001
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 42 0.001
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 42 0.001
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 42 0.001
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 42 0.001
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 41 0.002
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 41 0.002
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 41 0.002
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 34 0.21
AE014296-2069|AAS65018.1| 1799|Drosophila melanogaster CG33265-P... 34 0.21
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 32 0.84
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 31 1.9
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 53.2 bits (122), Expect = 3e-07
Identities = 25/69 (36%), Positives = 44/69 (63%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFL 191
V H+ L+ KL G ++++ ++L+ R +V++ ++S+ L GVPQGS+LGP L
Sbjct: 617 VWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTL 676
Query: 192 FLIYINDLP 218
F I+ +D+P
Sbjct: 677 FNIFTHDIP 685
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 53.2 bits (122), Expect = 3e-07
Identities = 25/69 (36%), Positives = 44/69 (63%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFL 191
V H+ L+ KL G ++++ ++L+ R +V++ ++S+ L GVPQGS+LGP L
Sbjct: 565 VWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTL 624
Query: 192 FLIYINDLP 218
F I+ +D+P
Sbjct: 625 FNIFTHDIP 633
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 51.2 bits (117), Expect = 1e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 72 ELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLPS 221
+L+ SYL R+ V + SS T++ GVPQGS+LGP L+ +Y D+P+
Sbjct: 148 KLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIPT 197
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 50.0 bits (114), Expect = 3e-06
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPF 188
V H+ L+ KL I +L+ +YLS R +V + G +S ++ GVPQGSILGP
Sbjct: 193 VWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPV 251
Query: 189 LFLIYINDLP 218
L+ IY +D+P
Sbjct: 252 LYSIYSSDMP 261
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 50.0 bits (114), Expect = 3e-06
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPF 188
V H+ L+ KL I +L+ +YLS R +V + G +S ++ GVPQGSILGP
Sbjct: 640 VWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPV 698
Query: 189 LFLIYINDLP 218
L+ IY +D+P
Sbjct: 699 LYSIYSSDMP 708
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 50.0 bits (114), Expect = 3e-06
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPF 188
V H+ L+ KL I +L+ +YLS R +V + G +S ++ GVPQGSILGP
Sbjct: 640 VWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPV 698
Query: 189 LFLIYINDLP 218
L+ IY +D+P
Sbjct: 699 LYSIYSSDMP 708
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 50.0 bits (114), Expect = 3e-06
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPF 188
V H+ L+ KL I +L+ +YLS R +V + G +S ++ GVPQGSILGP
Sbjct: 640 VWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPV 698
Query: 189 LFLIYINDLP 218
L+ IY +D+P
Sbjct: 699 LYSIYSSDMP 708
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 46.4 bits (105), Expect = 4e-05
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +3
Query: 72 ELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLPS 221
+L+ SYL R V S+ T++ GVPQGS+LGP L+LIY D+P+
Sbjct: 609 KLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPT 658
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 45.6 bits (103), Expect = 6e-05
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +3
Query: 75 LITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLPS 221
++ S+L R V V G +SS + GVPQGS+LGP L+ ++ +D+P+
Sbjct: 614 VVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPT 662
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 45.6 bits (103), Expect = 6e-05
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +3
Query: 75 LITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLPS 221
++ S+L R V V G +SS + GVPQGS+LGP L+ ++ +D+P+
Sbjct: 416 VVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPT 464
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 44.8 bits (101), Expect = 1e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 72 ELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLP 218
+L+ SYL R+ + + S ++ GVPQGS+LGP L+ +Y D P
Sbjct: 607 KLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFP 655
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 44.8 bits (101), Expect = 1e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 75 LITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLP 218
L+ SYL GR V S+ + GVPQGS+LGP L+ +Y +D+P
Sbjct: 612 LLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMP 659
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +3
Query: 75 LITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLP 218
++ SYL R V V+ + S ++ GVPQGS+LGP L+ ++ DLP
Sbjct: 613 VLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLP 660
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 43.6 bits (98), Expect = 3e-04
Identities = 27/95 (28%), Positives = 47/95 (49%)
Frame = +3
Query: 24 TLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIY 203
+++++L + ++ I +++S R TV V + SS L G+PQGS + LFLI
Sbjct: 588 SIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIA 647
Query: 204 INDLPSFIESRHEVVLFQMIHLYYLKLNDNYKSMT 308
N L + I E+ ++L +N N + T
Sbjct: 648 FNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNT 682
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 42.3 bits (95), Expect = 6e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 72 ELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLP 218
+L+ SYL + + + S ++ GVPQGS+LGP L+ +Y D P
Sbjct: 607 KLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFP 655
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 41.5 bits (93), Expect = 0.001
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGR-IQTVDVKGNRSSGTTLKMGVPQGSILGPF 188
V HE L+ KL + ++ SYL+ R + D G S + GVPQGS LGP
Sbjct: 521 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 579
Query: 189 LFLIYINDLP 218
L+ I+ +D+P
Sbjct: 580 LYSIFSSDMP 589
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 41.5 bits (93), Expect = 0.001
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGR-IQTVDVKGNRSSGTTLKMGVPQGSILGPF 188
V HE L+ KL + ++ SYL+ R + D G S + GVPQGS LGP
Sbjct: 637 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 695
Query: 189 LFLIYINDLP 218
L+ I+ +D+P
Sbjct: 696 LYSIFSSDMP 705
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 41.5 bits (93), Expect = 0.001
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGR-IQTVDVKGNRSSGTTLKMGVPQGSILGPF 188
V HE L+ KL + ++ SYL+ R + D G S + GVPQGS LGP
Sbjct: 637 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 695
Query: 189 LFLIYINDLP 218
L+ I+ +D+P
Sbjct: 696 LYSIFSSDMP 705
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 41.5 bits (93), Expect = 0.001
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGR-IQTVDVKGNRSSGTTLKMGVPQGSILGPF 188
V HE L+ KL + ++ SYL+ R + D G S + GVPQGS LGP
Sbjct: 599 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 657
Query: 189 LFLIYINDLP 218
L+ I+ +D+P
Sbjct: 658 LYSIFSSDMP 667
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 41.5 bits (93), Expect = 0.001
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGR-IQTVDVKGNRSSGTTLKMGVPQGSILGPF 188
V HE L+ KL + ++ SYL+ R + D G S + GVPQGS LGP
Sbjct: 637 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPI 695
Query: 189 LFLIYINDLP 218
L+ I+ +D+P
Sbjct: 696 LYSIFSSDMP 705
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGR-IQTVDVKGNRSSGTTLKMGVPQGSILGPF 188
V HE L+ KL + ++ SYL+ R + D G S + GVPQGS LGP
Sbjct: 637 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPL 695
Query: 189 LFLIYINDLP 218
L+ I+ +D+P
Sbjct: 696 LYSIFSSDMP 705
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGR-IQTVDVKGNRSSGTTLKMGVPQGSILGPF 188
V HE L+ KL + ++ SYL+ R + D G S + GVPQGS LGP
Sbjct: 649 VWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPL 707
Query: 189 LFLIYINDLP 218
L+ I+ +D+P
Sbjct: 708 LYSIFSSDMP 717
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = +3
Query: 18 HETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFL 197
H L R L +GI LI ++++ R V + S+ L G+PQGS L LF+
Sbjct: 595 HAVLCR-LERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFM 653
Query: 198 IYINDLPSFIESRHEVVLFQM 260
I I D+ + +RH+ + +
Sbjct: 654 IAIEDINDIV-TRHKDIYISL 673
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 33.9 bits (74), Expect = 0.21
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Frame = +2
Query: 77 YYFLFIRKDTNSR---CER-K*IFRHHVENGCTSGFHFGSFFISNIYKRFA*FY*VPTRG 244
Y FIR +++R CE + +FRH V G G G + +Y V R
Sbjct: 20 YLVRFIRSYSSNRVLPCESSEGVFRHQVTGGVPQGSVLGPLLWNTMYDGILRLPLVG-RS 78
Query: 245 RII--PDDTSLLFKIKRQLQVYDEVNDAISCVVHWFRINNLLLNSKKTKCI 391
I+ DD +LL K + + N I + HW L L +KTK +
Sbjct: 79 EIVGFADDVALLVVDKYPGKAEEMCNRNIRAIEHWLSSMGLELAPEKTKAV 129
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 156 GVPQGSILGPFLF-LIYINDLPSFIESRHEVVLF 254
GVPQGS+LGP L+ +Y L + R E+V F
Sbjct: 50 GVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGF 83
>AE014296-2069|AAS65018.1| 1799|Drosophila melanogaster CG33265-PA
protein.
Length = 1799
Score = 33.9 bits (74), Expect = 0.21
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 15 EHETLVRKL-HHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVP 164
+H+ ++KL + Y IRDG + I S S ++ +++ N + + LK+G P
Sbjct: 53 QHQQSLQKLSNQYVIRDGDTQYIKSRTSEKVSQLNLNKNNDTASKLKIGAP 103
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 31.9 bits (69), Expect = 0.84
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 39 LHHYGIRDGALELITSYLSGRIQT-VDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDL 215
+ + G+ D +I +Y R+ V G RS + GVPQGS+LGP L+ I + +
Sbjct: 574 MRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRSH--QVSAGVPQGSVLGPILWNIMYDGI 631
Query: 216 PSFIESR 236
S + R
Sbjct: 632 LSISKPR 638
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 30.7 bits (66), Expect = 1.9
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 12 VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTT---LKMGVPQGSILG 182
VE + +L G R+ + L S+ SGR + SSGT + G PQGSI G
Sbjct: 586 VEWSAALSRLADLGCRE--MGLWQSFFSGRRAVI----RSSSGTVEVPVTRGCPQGSISG 639
Query: 183 PFLFLIYINDL 215
PF++ I ++ L
Sbjct: 640 PFIWDILMDVL 650
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,187,640
Number of Sequences: 53049
Number of extensions: 557771
Number of successful extensions: 971
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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