Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0269
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    53   2e-07
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    38   0.005
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    38   0.005
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    36   0.021

>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +3

Query: 12  VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPF 188
           V H  L++KLH +GI          +LS R  +V V  +       +  GVP+GS+ GPF
Sbjct: 7   VNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPF 66

Query: 189 LFLIYINDL 215
           LFLI+IN L
Sbjct: 67  LFLIFINSL 75


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = +3

Query: 18  HETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFL 197
           H+ L+ KL         L  +  +LS R   V +    SS      GVPQG++L P LF 
Sbjct: 30  HDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFG 89

Query: 198 IYINDLPSFIESR 236
           IY+ND+ S +  +
Sbjct: 90  IYVNDISSILPEK 102


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 84  SYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDLPS 221
           +YL  R+       + S   TL  GVPQGS++ P LF  Y+ D+P+
Sbjct: 508 NYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPT 553


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 36   KLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPFLFLIYIND 212
            KL  +G+          +L  R  +V +    S  +  +  GVPQGS+ GP LF+++IN+
Sbjct: 839  KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898

Query: 213  L 215
            L
Sbjct: 899  L 899


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 12   VEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGN-RSSGTTLKMGVPQGSILGPF 188
            V HE L+ KL+ + +           +S +  +V V  +  S     ++G P+GS    F
Sbjct: 901  VPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQIGAPRGSESRQF 960

Query: 189  LFLIYINDL 215
            +FL++IN L
Sbjct: 961  MFLVFINSL 969


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,277
Number of Sequences: 27780
Number of extensions: 301508
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)