Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0269
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46640.1 68418.m05744 DNA-binding family protein contains a A...    29   2.2  
At4g24000.1 68417.m03449 cellulose synthase family protein simil...    29   2.9  
At4g00790.1 68417.m00109 expressed protein                             28   6.7  
At5g37540.1 68418.m04521 aspartyl protease family protein weak s...    27   8.9  
At1g66180.1 68414.m07512 aspartyl protease family protein contai...    27   8.9  

>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 386

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 3   ARGVEHETLVRKLHHY-GI--RDGALELITSYLSGRIQTVDVKG--NRSSGTTLKMGVPQ 167
           A G     ++R+  H  GI   +G  E+IT  LSG +   +V G  NRS   ++ +  P 
Sbjct: 213 ASGAVSRVMLRQASHSSGIVTYEGRFEIIT--LSGSVLNYEVNGSTNRSGNLSVALAGPD 270

Query: 168 GSILG 182
           G I+G
Sbjct: 271 GGIVG 275


>At4g24000.1 68417.m03449 cellulose synthase family protein similar
           to cellulose synthase from Gossypium hirsutum
           [gi:1706956], cellulose synthase-5 from Zea mays
           [gi:9622882]
          Length = 722

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +2

Query: 512 TPNCSGDLIFINWRVSLALQHTRKKN*NVNKCGHGPFSLL*LLPQCH-VLWAFW 670
           +P C  D+I    R S+ L        N    G  P SLL  L  CH   W FW
Sbjct: 465 SPKCLTDVIGQQIRWSVGLLEVAFSRYNPLTYGIKPLSLLMSLGYCHYAFWPFW 518


>At4g00790.1 68417.m00109 expressed protein 
          Length = 435

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 75  LITSYLSGRIQTVDVKGNR---SSGTTLKMGVPQGSILGPFLFLIYINDLPSFIESRHEV 245
           +I  YLSG +    ++ +    SSG  ++  +P+ + +    +L  +ND P FI+     
Sbjct: 266 VIEVYLSGSLDFSRLRKHEAVDSSGENIRRDIPKEAKI----YLEGLNDFPKFIQDNPVN 321

Query: 246 VLFQMIHLY 272
           V   MI LY
Sbjct: 322 VTDDMIELY 330


>At5g37540.1 68418.m04521 aspartyl protease family protein weak
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Prosite
           PS00141: Eukaryotic and viral aspartyl proteases active
           site; contains 1 predicted transmembrane domain
          Length = 442

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 564 LCSIRVKKIRMLTNADTARLVYFSYFHS 647
           LC  R+    + T+ D+ RL ++SYF++
Sbjct: 141 LCKPRIPDFTLPTSCDSNRLCHYSYFYA 168


>At1g66180.1 68414.m07512 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease profile;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]
          Length = 430

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 564 LCSIRVKKIRMLTNADTARLVYFSYFHS 647
           LC  R+    + T+ D+ RL ++SYF++
Sbjct: 130 LCKPRIPDFTLPTSCDSNRLCHYSYFYA 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,493
Number of Sequences: 28952
Number of extensions: 273263
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)