Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0268
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015...    29   4.6  

>05_07_0367 -
           29700855-29700920,29701092-29701149,29701446-29701503,
           29701800-29701857,29702154-29702211,29702508-29702551,
           29702840-29703022,29703192-29703249,29703545-29703602,
           29703897-29703954,29704250-29704307,29704956-29705013,
           29705310-29705367,29705664-29705721,29706348-29706398,
           29706695-29706752,29707049-29707106,29707403-29707459,
           29707754-29707810,29708085-29708135,29708431-29708507,
           29708785-29708842,29709139-29709195,29709490-29709546,
           29709821-29709893,29710167-29710224,29710521-29710578,
           29710875-29710931,29711558-29711608,29711904-29711980,
           29712258-29712315,29712612-29712669,29712966-29713016,
           29713667-29713717,29714014-29714057,29714368-29714444,
           29714722-29714779,29715076-29715126,29715423-29715480,
           29715776-29715833,29716130-29716187,29716484-29716534,
           29716831-29716907,29717185-29717242,29717539-29717589,
           29718240-29718316,29718594-29718651,29718947-29719004,
           29719301-29719351,29719648-29719705,29723277-29723334,
           29723631-29723681,29724331-29724388,29724684-29724741,
           29725038-29725088,29725385-29725442,29725738-29725814,
           29726092-29726148,29726444-29726501,29726798-29726848,
           29727070-29727075
          Length = 1209

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 187 LFYDTVRRKFEKRWHILWVVSYIALDNLCRTFVQPVT 297
           L Y T RR     W +LW + Y     + R+FV   T
Sbjct: 729 LRYSTFRRTTAASWPMLWTLRYSTFHRINRSFVAYAT 765



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 187 LFYDTVRRKFEKRWHILWVVSYIALDNLCRTFV 285
           L Y T RR     W +LW + Y     + R+FV
Sbjct: 628 LRYSTFRRTTAASWPMLWTLRYSTFHRINRSFV 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,506
Number of Sequences: 37544
Number of extensions: 201853
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)