Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0267
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.30 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   2.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.30
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -1

Query: 596 RCVDELTAHLMLSGFWSP 543
           R VDELTAHL+LSG+WSP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175



 Score = 36.3 bits (80), Expect = 0.70
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +1

Query: 235 SAFFIA*WVXXLTAHLVLSGYW 300
           S F +  WV  LTAHLVLSGYW
Sbjct: 152 SRFLLLRWVDELTAHLVLSGYW 173


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 435 W*YLPVRTHKRSYHQ*KLSW 494
           W YLP RTHKRSYH+ + S+
Sbjct: 571 WWYLPARTHKRSYHRYQCSY 590


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,365,647
Number of Sequences: 1657284
Number of extensions: 11115651
Number of successful extensions: 20293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20292
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)