Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0267
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    28   1.1  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    27   1.9  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   1.9  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   2.5  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.8  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 141  VKLTKLFANSNFYIFLTRTTIVYETF-NIIIFFGLFYCLM 257
            VKL +L  + NF++ L + T   ++F N +IF G+ Y L+
Sbjct: 1229 VKLIRLQNHKNFFMKLFQLTPTSKSFQNFLIFAGVIYYLL 1268


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +3

Query: 129 RYAMVKLTKLFANSNFYI--FLTRTTIVYETFNIIIFFGLFYCLMGGRXHSPPGVKWLLE 302
           +YA+      F  S+ Y+  F   T +VY  + I    GLF+  + G+  S    KWLL 
Sbjct: 509 KYAIYLTLSTFVCSSRYLLDFHYLTQVVYG-YMIGFGVGLFWVYLVGKLRSLGVTKWLLS 567

Query: 303 --PIDFYNV 323
             P+ F+ +
Sbjct: 568 LPPLQFFYI 576


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 174 FYIFLTRTTI--VYETFNIIIFFGLFYCLMGGRXHSPPGVKWLLEPIDFYNVNAPPTLRY 347
           F  FL+ + +  +  + NI I     YC +G +   P  + W +  ++FY  +APP   Y
Sbjct: 137 FEDFLSESLVPEISPSVNIPIDETALYCFIGIQETEPIRIPWPVLTVEFYG-DAPPPESY 195


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 170 QLLYFFNKNYHSIRDI*YYYILRPFLLLNGW 262
           QL +F  K  HS  D+   Y+ +P + ++GW
Sbjct: 197 QLSFFRVKPGHSFHDVEEVYVDKPRMAISGW 227


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 582 AHSPPDVKWFLEPIDIYNVNASHTL 508
           A  PP +K    P+DI N++A+  L
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,878
Number of Sequences: 5004
Number of extensions: 47332
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)