Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0267
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   4.6  
08_02_0388 + 16603720-16603987,16604022-16604420,16604569-16604582     28   6.0  

>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 245 KKAEEYNNIKCLVYYGSSC*KNIKVAISK*LSEFHHCISN 126
           KKA EYN+ K  VY  S+  +++ V + + + + H   +N
Sbjct: 99  KKASEYNSHKWTVYVRSATNEDLSVIVKRVVFQLHPSFTN 138


>08_02_0388 + 16603720-16603987,16604022-16604420,16604569-16604582
          Length = 226

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 108 WTRLHKIRYAMVKLTKLFANSNFYIFLTRTTIVYETFNI 224
           W RL  +     KL   F +  F +F T  +  YE FNI
Sbjct: 118 WARLPPLPRTFAKLESGFFDKEFIVFDTTLSPHYEVFNI 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,985
Number of Sequences: 37544
Number of extensions: 308143
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)