Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0267
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)                   28   8.1  

>SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 388 YSNRSALLLHGRNRRGGSTYPC 453
           YS ++A   HG+ R GGS++ C
Sbjct: 295 YSGQAAATSHGKGRTGGSSFEC 316


>SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -2

Query: 529 RKCVTHLRYSSNHESFYWW*DLL*VRTGRYYHPVYFCREAVMRFDLNSGAAVLTILRP*N 350
           R C  H  Y    E F ++ ++  +R    YH  Y   + +  FDL   + ++ +    +
Sbjct: 49  RNCGVHHGYDYAVEWFDFYENMYRIRRKSVYHRKYHLEKVLFDFDLEGTSLIMRLNSSED 108

Query: 349 LYLKV 335
           ++L V
Sbjct: 109 IWLSV 113


>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
          Length = 385

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 242 KAEEYN-NIKCLVYYGSSC*KNIKVAISK*LSEFHH 138
           K   YN N+K ++ YGS C + +K  + K +S FH+
Sbjct: 287 KLRLYNSNVKSVLLYGSECWRVVKADMDK-ISAFHN 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,247
Number of Sequences: 59808
Number of extensions: 369652
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)