Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0267
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    32   0.44 
Z66511-4|CAA91316.1|  813|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical ...    29   3.1  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 TIVYETFNII-IFFGLFYCLMGGRXHSPPGVKWLLEPIDFYNVNAP 332
           TI    F II I +  +YCL+     SP   KWL EPI +++ +AP
Sbjct: 599 TIFCAIFYIIFIAYLTYYCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>Z66511-4|CAA91316.1|  813|Caenorhabditis elegans Hypothetical
           protein F07A11.3 protein.
          Length = 813

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 57  VANGEXGSMQIAFSMIMWTRLHKIRYAMVKL--TKLFANSNF 176
           +A GE    Q   S +MWTRLH+I Y+ V++   KL A SN+
Sbjct: 51  LAFGEFDIPQGQISPLMWTRLHEI-YSEVEMQTRKLPAGSNY 91


>Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 147 LTKLFANSNFYIFLTRTTIVYETFNIIIFFGLFYCLMGG 263
           L+ +F + N YI+       YE F I  F  L Y  +GG
Sbjct: 68  LSLIFFSDNVYIYFNSIRDCYEAFVIYSFLSLCYEYLGG 106


>Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 147 LTKLFANSNFYIFLTRTTIVYETFNIIIFFGLFYCLMGG 263
           L+ +F + N YI+       YE F I  F  L Y  +GG
Sbjct: 68  LSLIFFSDNVYIYFNSIRDCYEAFVIYSFLSLCYEYLGG 106


>AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical
           protein C01B12.4 protein.
          Length = 384

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 180 IFLTRTTIVYETFNIIIFFGLFYCLMGGRXHSPPGVKWLLEPIDFYNVNAPPTLRYKF 353
           IFL   ++VY  F + I   L + + GGR        +LL+     N   PP   +KF
Sbjct: 96  IFLYAVSLVYFMFTLFIMVTLLFNIFGGRQEMS---AYLLQRNIRVNFTVPPLCFFKF 150


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 359 TLELISQGGRRIYVVEVYGLQ*PLNTRW 276
           +++LI    RRI+   VYG++ P+N  W
Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSW 245


>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +2

Query: 383 PTIQIEAHYCFTAEIDGVVVPTRADSQEVLPPVK-AFMVRTISKVCDAFTL*MSMGSRNH 559
           P +   A    T    GV+ P  +  + V+PP K  F   T + V    T   S G  N 
Sbjct: 158 PLVATTAQAKSTVPASGVIAPKTSPPEVVIPPAKPTFSTPTPAVVPKPATTGFSFGGTNP 217

Query: 560 LTS 568
            TS
Sbjct: 218 ATS 220


>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +2

Query: 383 PTIQIEAHYCFTAEIDGVVVPTRADSQEVLPPVK-AFMVRTISKVCDAFTL*MSMGSRNH 559
           P +   A    T    GV+ P  +  + V+PP K  F   T + V    T   S G  N 
Sbjct: 158 PLVATTAQAKSTVPASGVIAPKTSPPEVVIPPAKPTFSTPTPAVVPKPATTGFSFGGTNP 217

Query: 560 LTS 568
            TS
Sbjct: 218 ATS 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,569
Number of Sequences: 27780
Number of extensions: 268518
Number of successful extensions: 553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)