Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0267
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.8  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 251 AIKKAEEYNNIKCLVYYGS 195
           A K   EYNN+K +V  GS
Sbjct: 217 AKKSLTEYNNLKAMVVSGS 235


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 140 HCISNFMKPCPHYH*KGDLHR 78
           HCI   ++   H H  G +HR
Sbjct: 13  HCIQQILESVHHCHHNGVVHR 33


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 182 FFNKNYHSIRDI*YYYILRPFLLLNGWXXSQPTWC*VVTGA 304
           +F K+   I+    YY+ R   ++NG       W  V  G+
Sbjct: 131 WFKKSVQRIKPYDEYYVWRDARIVNGTRQPPNNWLSVFWGS 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,929
Number of Sequences: 438
Number of extensions: 3264
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)