Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0267
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35110.1 68418.m04154 hypothetical protein predicted protein,...    27   8.8  
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    27   8.8  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    27   8.8  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    27   8.8  

>At5g35110.1 68418.m04154 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 112

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 370 LKRLPHYSNRSALLLHGRNRRGGSTYPC 453
           ++R P++ N     LH R+R GGS  PC
Sbjct: 25  IQRRPYHKN-CGCALHERSRGGGSATPC 51


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 394 NRSALLLHGRNRRGGSTYPCGLTRGP 471
           + SA ++   NRRGGS+  C L R P
Sbjct: 158 DESARMISRHNRRGGSSSSCQLRRKP 183


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 394 NRSALLLHGRNRRGGSTYPCGLTRGP 471
           + SA ++   NRRGGS+  C L R P
Sbjct: 158 DESARMISRHNRRGGSSSSCQLRRKP 183


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 394 NRSALLLHGRNRRGGSTYPCGLTRGP 471
           + SA ++   NRRGGS+  C L R P
Sbjct: 158 DESARMISRHNRRGGSSSSCQLRRKP 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,258
Number of Sequences: 28952
Number of extensions: 245176
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)