Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0266
(693 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4S8W6 Cluster: Ribonucleoside-diphosphate reductase; n... 163 4e-39
UniRef50_P07742 Cluster: Ribonucleoside-diphosphate reductase la... 153 5e-36
UniRef50_P23921 Cluster: Ribonucleoside-diphosphate reductase la... 149 5e-35
UniRef50_Q01H73 Cluster: Ribonucleoside-diphosphate reductase; n... 141 1e-32
UniRef50_Q9SJ20 Cluster: Ribonucleoside-diphosphate reductase la... 136 4e-31
UniRef50_Q8JKL8 Cluster: Ribonucleoside-diphosphate reductase; n... 133 4e-30
UniRef50_O12935 Cluster: Ribonucleoside-diphosphate reductase; n... 128 2e-28
UniRef50_Q75BW6 Cluster: Ribonucleoside-diphosphate reductase; n... 118 2e-25
UniRef50_Q9QAL9 Cluster: Ribonucleoside-diphosphate reductase; n... 109 5e-23
UniRef50_Q7T6Y8 Cluster: Ribonucleoside-diphosphate reductase la... 100 3e-20
UniRef50_Q6MLM3 Cluster: Ribonucleoside-diphosphate reductase al... 96 8e-19
UniRef50_P26685 Cluster: Ribonucleoside-diphosphate reductase la... 93 4e-18
UniRef50_O41111 Cluster: Ribonucleoside-diphosphate reductase; n... 93 6e-18
UniRef50_A7IY07 Cluster: Putative uncharacterized protein B832R;... 88 2e-16
UniRef50_Q4J4L6 Cluster: Ribonucleoside-diphosphate reductase; n... 88 2e-16
UniRef50_Q9HMU3 Cluster: Ribonucleoside-diphosphate reductase; n... 85 2e-15
UniRef50_Q3AEA3 Cluster: Ribonucleoside-diphosphate reductase, a... 84 4e-15
UniRef50_O84834 Cluster: Ribonucleoside-diphosphate reductase su... 83 5e-15
UniRef50_Q67KQ2 Cluster: Ribonucleoside-diphosphate reductase; n... 78 2e-13
UniRef50_A2XAQ8 Cluster: Ribonucleoside-diphosphate reductase; n... 78 2e-13
UniRef50_Q39JT6 Cluster: Ribonucleoside-diphosphate reductase; n... 78 2e-13
UniRef50_Q3E5I1 Cluster: Ribonucleoside-diphosphate reductase; n... 77 5e-13
UniRef50_P74911 Cluster: Ribonucleoside-diphosphate reductase; n... 76 1e-12
UniRef50_UPI0000F5175D Cluster: hypothetical protein Faci_030006... 75 1e-12
UniRef50_Q8R7R2 Cluster: Ribonucleoside-diphosphate reductase; n... 75 2e-12
UniRef50_Q6A5Y5 Cluster: Ribonucleoside-diphosphate reductase al... 75 2e-12
UniRef50_A4L245 Cluster: Ribonucleotide reductase large subunit;... 74 4e-12
UniRef50_Q8TQ86 Cluster: Ribonucleoside-diphosphate reductase; n... 73 5e-12
UniRef50_Q6R7H4 Cluster: Ribonucleoside-diphosphate reductase; n... 73 9e-12
UniRef50_Q6UDJ2 Cluster: Ribonucleoside-diphosphate reductase; n... 71 2e-11
UniRef50_Q91ES8 Cluster: ORF127 RR1; n=1; Cydia pomonella granul... 71 3e-11
UniRef50_A2DI13 Cluster: Ribonucleoside-diphosphate reductase; n... 71 3e-11
UniRef50_A6QCU9 Cluster: Ribonucleoside-diphosphate reductase, a... 70 6e-11
UniRef50_O26748 Cluster: Ribonucleoside-diphosphate reductase; n... 70 6e-11
UniRef50_Q67SN6 Cluster: Ribonucleoside-diphosphate reductase; n... 69 1e-10
UniRef50_A0RYG3 Cluster: Ribonucleoside-diphosphate reductase; n... 69 1e-10
UniRef50_P55982 Cluster: Ribonucleoside-diphosphate reductase su... 69 1e-10
UniRef50_Q647Z9 Cluster: Ribonucleoside-diphosphate reductase; n... 69 1e-10
UniRef50_Q6QXF6 Cluster: ORF37; n=4; Baculoviridae|Rep: ORF37 - ... 68 2e-10
UniRef50_Q6AJC4 Cluster: Ribonucleoside-diphosphate reductase; n... 68 2e-10
UniRef50_Q6VMN2 Cluster: Ribonucleoside-diphosphate reductase; n... 67 3e-10
UniRef50_A5FSC1 Cluster: Ribonucleoside-diphosphate reductase, a... 67 4e-10
UniRef50_Q9UYA0 Cluster: Ribonucleoside-diphosphate reductase; n... 67 4e-10
UniRef50_P95484 Cluster: Ribonucleoside-diphosphate reductase; n... 67 4e-10
UniRef50_A3QTY4 Cluster: Ribonucleotide reductase large subunit;... 66 1e-09
UniRef50_Q8VKI9 Cluster: Ribonucleoside-diphosphate reductase; n... 65 1e-09
UniRef50_O83972 Cluster: Ribonucleoside-diphosphate reductase su... 65 1e-09
UniRef50_O66503 Cluster: Ribonucleoside-diphosphate reductase su... 65 1e-09
UniRef50_Q2VSI0 Cluster: Ribonucleoside-diphosphate reductase; n... 64 4e-09
UniRef50_Q5KX82 Cluster: Ribonucleoside-diphosphate reductase; n... 64 4e-09
UniRef50_A0B8R8 Cluster: Ribonucleoside-diphosphate reductase; n... 63 5e-09
UniRef50_P74240 Cluster: Ribonucleoside-diphosphate reductase su... 63 7e-09
UniRef50_Q18UV0 Cluster: Ribonucleoside-diphosphate reductase; n... 62 9e-09
UniRef50_Q4C9K9 Cluster: Ribonucleoside-diphosphate reductase; n... 62 1e-08
UniRef50_Q97ZH9 Cluster: Ribonucleoside-diphosphate reductase; n... 62 1e-08
UniRef50_UPI00015BC77F Cluster: UPI00015BC77F related cluster; n... 62 2e-08
UniRef50_Q5SM68 Cluster: Ribonucleoside-diphosphate reductase; n... 60 4e-08
UniRef50_A5TVY2 Cluster: Ribonucleoside-diphosphate reductase; n... 60 4e-08
UniRef50_Q9IBT4 Cluster: Ribonucleoside-diphosphate reductase; n... 59 9e-08
UniRef50_Q5LNK9 Cluster: Ribonucleoside-diphosphate reductase, p... 59 1e-07
UniRef50_A3H704 Cluster: Ribonucleoside-diphosphate reductase; n... 59 1e-07
UniRef50_A3JKM6 Cluster: Ribonucleoside reductase; n=1; Marinoba... 58 2e-07
UniRef50_Q9PE32 Cluster: Ribonucleoside-diphosphate reductase; n... 58 3e-07
UniRef50_A1YJD3 Cluster: Ribonucleoside-diphosphate reductase; n... 57 4e-07
UniRef50_O33839 Cluster: Ribonucleoside-diphosphate reductase; n... 57 4e-07
UniRef50_A7I485 Cluster: Ribonucleoside-diphosphate reductase, a... 57 4e-07
UniRef50_Q5P1D5 Cluster: Ribonucleotide reductase, Coenzyme B12-... 56 6e-07
UniRef50_Q2RP92 Cluster: Ribonucleotide reductase large subunit;... 56 6e-07
UniRef50_A6NX38 Cluster: Ribonucleoside-diphosphate reductase; n... 56 6e-07
UniRef50_Q9YA77 Cluster: Ribonucleoside-diphosphate reductase; n... 56 6e-07
UniRef50_P09853 Cluster: Ribonucleoside-diphosphate reductase la... 56 6e-07
UniRef50_A7KUZ9 Cluster: Nrd alpha subunit; n=1; Bacillus phage ... 56 8e-07
UniRef50_A7HK53 Cluster: Ribonucleoside-diphosphate reductase, a... 56 1e-06
UniRef50_Q9RZL7 Cluster: Ribonucleoside-diphosphate reductase; n... 55 1e-06
UniRef50_Q21U31 Cluster: Ribonucleoside-diphosphate reductase; n... 55 1e-06
UniRef50_A7IYE5 Cluster: Putivate ribonucleotide reductase; n=1;... 55 1e-06
UniRef50_Q89YE5 Cluster: Ribonucleoside-diphosphate reductase; n... 55 2e-06
UniRef50_Q2LW62 Cluster: Ribonucleoside-diphosphate reductase al... 54 3e-06
UniRef50_Q18BC3 Cluster: Putative ribonucleotide-diphosphate red... 54 4e-06
UniRef50_Q01037 Cluster: Ribonucleoside-diphosphate reductase la... 54 4e-06
UniRef50_A3EPA5 Cluster: Ribonucleoside-diphosphate reductase; n... 53 6e-06
UniRef50_A2PYM5 Cluster: Ribonucleoside-diphosphate reductase al... 53 6e-06
UniRef50_O36411 Cluster: Ribonucleoside-diphosphate reductase; n... 53 8e-06
UniRef50_A3W1N9 Cluster: Ribonucleoside-diphosphate reductase; n... 53 8e-06
UniRef50_A0MN59 Cluster: Ribonucleotide reductase alpha subunit;... 53 8e-06
UniRef50_P50643 Cluster: Ribonucleoside-diphosphate reductase la... 53 8e-06
UniRef50_Q7NEB4 Cluster: Gll3966 protein; n=1; Gloeobacter viola... 52 1e-05
UniRef50_A3I5A9 Cluster: Ribonucleoside-diphosphate reductase; n... 52 1e-05
UniRef50_Q7UI46 Cluster: Vitamin B12-dependent ribonucleotide re... 52 2e-05
UniRef50_A4IY36 Cluster: Ribonucleoside-diphosphate reductase, a... 51 2e-05
UniRef50_Q1FPU1 Cluster: Ribonucleoside-diphosphate reductase; n... 51 3e-05
UniRef50_Q8Y2Y6 Cluster: Ribonucleoside-diphosphate reductase; n... 50 4e-05
UniRef50_A1HDY4 Cluster: Ribonucleoside-diphosphate reductase; n... 50 4e-05
UniRef50_Q3B5C1 Cluster: Ribonucleotide reductase family protein... 50 5e-05
UniRef50_Q3SMN2 Cluster: Ribonucleoside-diphosphate reductase al... 50 7e-05
UniRef50_Q1J1T0 Cluster: Ribonucleoside-diphosphate reductase; n... 50 7e-05
UniRef50_Q120H3 Cluster: Ribonucleotide reductase large subunit;... 50 7e-05
UniRef50_Q0LX20 Cluster: Ribonucleoside-diphosphate reductase; n... 49 9e-05
UniRef50_O55716 Cluster: Ribonucleoside-diphosphate reductase; n... 48 2e-04
UniRef50_Q6MNP6 Cluster: Vitamin B12-dependent ribonucleotide re... 48 2e-04
UniRef50_Q88YQ4 Cluster: Ribonucleoside-diphosphate reductase, a... 48 2e-04
UniRef50_A5JBG3 Cluster: Ribonucleotide reductase, large subunit... 48 2e-04
UniRef50_UPI00004BA6C5 Cluster: UPI00004BA6C5 related cluster; n... 48 3e-04
UniRef50_Q196Z5 Cluster: Ribonucleoside-diphosphate reductase; n... 48 3e-04
UniRef50_A4WLF4 Cluster: Ribonucleoside-diphosphate reductase, a... 48 3e-04
UniRef50_Q9RRW1 Cluster: Ribonucleoside-diphosphate reductase; n... 46 7e-04
UniRef50_Q604J6 Cluster: Ribonucleoside-diphosphate reductase; n... 46 9e-04
UniRef50_Q8ZTP7 Cluster: Ribonucleoside-diphosphate reductase; n... 45 0.002
UniRef50_P78027 Cluster: Ribonucleoside-diphosphate reductase su... 45 0.002
UniRef50_A7CVZ3 Cluster: Ribonucleoside-diphosphate reductase pr... 45 0.002
UniRef50_A1W357 Cluster: Ribonucleoside-diphosphate reductase; n... 45 0.002
UniRef50_A1TJY2 Cluster: Ribonucleoside-diphosphate reductase, a... 44 0.003
UniRef50_P0A5W9 Cluster: Ribonucleoside-diphosphate reductase su... 44 0.003
UniRef50_Q2S5T5 Cluster: Ribonucleoside-diphosphate reductase, a... 44 0.004
UniRef50_P03190 Cluster: Ribonucleoside-diphosphate reductase la... 44 0.004
UniRef50_Q9HPG8 Cluster: Ribonucleoside-diphosphate reductase; n... 42 0.011
UniRef50_Q5DN91 Cluster: Ribonucleotide reductase; n=1; Phage ph... 42 0.014
UniRef50_Q2NME4 Cluster: Ribonucleoside-diphosphate reductase la... 42 0.019
UniRef50_P50620 Cluster: Ribonucleoside-diphosphate reductase su... 42 0.019
UniRef50_O41962 Cluster: Ribonucleoside-diphosphate reductase; n... 41 0.025
UniRef50_A5FCJ4 Cluster: Ribonucleoside-diphosphate reductase, a... 41 0.033
UniRef50_Q5A0N2 Cluster: Putative uncharacterized protein; n=1; ... 41 0.033
UniRef50_O41114 Cluster: A632L protein; n=1; Paramecium bursaria... 40 0.044
UniRef50_Q897Z5 Cluster: Ribonucleoside-diphosphate reductase; n... 40 0.044
UniRef50_A0LDD1 Cluster: Ribonucleoside-diphosphate reductase, a... 40 0.044
UniRef50_P37426 Cluster: Ribonucleoside-diphosphate reductase 1 ... 40 0.044
UniRef50_Q8SCB8 Cluster: Large subunit ribonucleotide reductase;... 40 0.058
UniRef50_Q66LW9 Cluster: Ribonucleoside-diphosphate reductase 1 ... 40 0.058
UniRef50_Q6YRG1 Cluster: Ribonucleoside-diphosphate reductase; n... 39 0.10
UniRef50_Q1ISM3 Cluster: Ribonucleoside-diphosphate reductase; n... 39 0.10
UniRef50_Q0W4L0 Cluster: Putative uncharacterized protein; n=2; ... 39 0.13
UniRef50_O55567 Cluster: P25; n=1; Leucania separata nuclear pol... 38 0.18
UniRef50_A7HCF4 Cluster: Ribonucleoside-diphosphate reductase, a... 38 0.23
UniRef50_UPI000155442E Cluster: hypothetical protein ORF046; n=1... 37 0.41
UniRef50_A3XHF8 Cluster: Ribonucleoside-diphosphate reductase, a... 37 0.54
UniRef50_Q6LQZ0 Cluster: Putative uncharacterized protein; n=2; ... 36 0.94
UniRef50_Q7TDH5 Cluster: Ribonucleoside-diphosphate reductase; n... 35 1.6
UniRef50_Q18GD3 Cluster: Ribonucleoside-diphosphate reductase al... 35 1.6
UniRef50_O31875 Cluster: Ribonucleoside-diphosphate reductase; n... 35 2.2
UniRef50_Q5CHN1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.8
UniRef50_O69981 Cluster: Vitamin B12-dependent ribonucleotide re... 34 3.8
UniRef50_Q89MB9 Cluster: Vitamin B12-dependent ribonucleotide re... 34 3.8
UniRef50_Q7RJL4 Cluster: Putative uncharacterized protein PY0324... 33 5.0
UniRef50_A2FWX8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.0
UniRef50_Q7REC9 Cluster: Putative uncharacterized protein PY0513... 33 6.6
UniRef50_A0DYW6 Cluster: Chromosome undetermined scaffold_7, who... 33 6.6
UniRef50_UPI00006CE942 Cluster: hypothetical repeat containing p... 33 8.8
>UniRef50_Q4S8W6 Cluster: Ribonucleoside-diphosphate reductase; n=3;
Tetraodontidae|Rep: Ribonucleoside-diphosphate reductase
- Tetraodon nigroviridis (Green puffer)
Length = 898
Score = 163 bits (396), Expect = 4e-39
Identities = 83/124 (66%), Positives = 94/124 (75%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
AVCNLASIALNM+V +TY+F KL VTKTI +NLNKIID+NYYPVPEAK+SNLRHRPI
Sbjct: 494 AVCNLASIALNMYVTPQRTYDFHKLASVTKTIVKNLNKIIDINYYPVPEAKRSNLRHRPI 553
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAP 614
GIGVQGLADAFILMR PYESPEA + + ALEASCELAA+ + +P
Sbjct: 554 GIGVQGLADAFILMRHPYESPEAQLLNTQIFETIYHAALEASCELAAEFGPYQTY-AGSP 612
Query: 615 ASRG 626
SRG
Sbjct: 613 VSRG 616
Score = 147 bits (356), Expect = 3e-34
Identities = 65/85 (76%), Positives = 72/85 (84%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGL DCWG+EFE LY YEKE R V+AQ LW AIIE+Q ETGTPYML+KD+CNRKSN
Sbjct: 409 PGLTDCWGEEFEELYTRYEKEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSN 468
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDEV 255
Q+NLGTI+CSNLCTEIVEYTS DEV
Sbjct: 469 QQNLGTIRCSNLCTEIVEYTSKDEV 493
>UniRef50_P07742 Cluster: Ribonucleoside-diphosphate reductase large
subunit; n=93; root|Rep: Ribonucleoside-diphosphate
reductase large subunit - Mus musculus (Mouse)
Length = 792
Score = 153 bits (370), Expect = 5e-36
Identities = 76/107 (71%), Positives = 86/107 (80%), Gaps = 1/107 (0%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
AVCNLAS+ALNM+V TY+F+KL EVTK I NLNKIID+NYYP+PEA SN RHRPI
Sbjct: 442 AVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPI 501
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYL-KLFTMGALEASCELA 572
GIGVQGLADAFILMR P+ESPEA +NK + + GALEASCELA
Sbjct: 502 GIGVQGLADAFILMRYPFESPEA-QLLNKQIFETIYYGALEASCELA 547
Score = 145 bits (351), Expect = 1e-33
Identities = 65/85 (76%), Positives = 73/85 (85%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGL + WG+EFE LYE+YEK+ R V+AQ LW AIIE+Q ETGTPYML+KDSCNRKSN
Sbjct: 357 PGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDEV 255
Q+NLGTIKCSNLCTEIVEYTS DEV
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEV 441
Score = 39.9 bits (89), Expect = 0.058
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +2
Query: 509 LNQQIFETIYYGSTRGKL*TSSKSMGVYDTYDGCP 613
LN+QIFETIYYG+ +K G Y+TY+G P
Sbjct: 527 LNKQIFETIYYGALEASC-ELAKEYGPYETYEGSP 560
>UniRef50_P23921 Cluster: Ribonucleoside-diphosphate reductase large
subunit; n=110; root|Rep: Ribonucleoside-diphosphate
reductase large subunit - Homo sapiens (Human)
Length = 792
Score = 149 bits (362), Expect = 5e-35
Identities = 75/107 (70%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
AVCNLAS+ALNM+V TY+FKKL EVTK + NLNKIID+NYYPVPEA SN RHRPI
Sbjct: 442 AVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPI 501
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYL-KLFTMGALEASCELA 572
GIGVQGLADAFILMR P+ES EA +NK + + GALEASC+LA
Sbjct: 502 GIGVQGLADAFILMRYPFESAEA-QLLNKQIFETIYYGALEASCDLA 547
Score = 142 bits (345), Expect = 6e-33
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGL + WG+EFE LY +YEK+ R V+AQ LW AIIE+Q ETGTPYML+KDSCNRKSN
Sbjct: 357 PGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDEV 255
Q+NLGTIKCSNLCTEIVEYTS DEV
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEV 441
Score = 41.9 bits (94), Expect = 0.014
Identities = 25/76 (32%), Positives = 36/76 (47%)
Frame = +2
Query: 464 FYFNAFTLRKSRSY*LNQQIFETIYYGSTRGKL*TSSKSMGVYDTYDGCPCKSRAYYSTT 643
F + + + LN+QIFETIYYG+ +K G Y+TY+G P S+
Sbjct: 512 FILMRYPFESAEAQLLNKQIFETIYYGALEASC-DLAKEQGPYETYEGSPV-SKGILQYD 569
Query: 644 CGIKNPTRFYGDWDLL 691
PT + DW +L
Sbjct: 570 MWNVTPTDLW-DWKVL 584
>UniRef50_Q01H73 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Ostreococcus tauri|Rep: Ribonucleoside-diphosphate
reductase - Ostreococcus tauri
Length = 840
Score = 141 bits (342), Expect = 1e-32
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGL+DCWG+EFE+LYE YE E + ++AQ LW AI+E+QVETG PYMLFKD+CNRKSN
Sbjct: 363 PGLSDCWGEEFETLYEKYEAEGKGKKTIKAQQLWFAILESQVETGNPYMLFKDACNRKSN 422
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDE 252
Q+NLGTIK SNLCTEIVEYTS DE
Sbjct: 423 QQNLGTIKSSNLCTEIVEYTSPDE 446
Score = 103 bits (246), Expect = 5e-21
Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 22/106 (20%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDN----------------------KTYNFKKLKEVTKTITENLN 365
+AVCNLASIAL FV +N + ++ KL E+T+ +T NLN
Sbjct: 447 TAVCNLASIALPRFVIENNPSSPTGRTETKKLVGSLKSKERFFDHSKLFEITRKVTRNLN 506
Query: 366 KIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEA 503
+IIDVNYYPV AK SN+RHRPIG+GVQGLAD FIL+ LP++SPEA
Sbjct: 507 RIIDVNYYPVEAAKNSNMRHRPIGLGVQGLADVFILLGLPFDSPEA 552
>UniRef50_Q9SJ20 Cluster: Ribonucleoside-diphosphate reductase large
subunit; n=17; cellular organisms|Rep:
Ribonucleoside-diphosphate reductase large subunit -
Arabidopsis thaliana (Mouse-ear cress)
Length = 816
Score = 136 bits (330), Expect = 4e-31
Identities = 61/84 (72%), Positives = 69/84 (82%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGLADCWG EFE+LY YE+E + V+AQ LW I+ +QVETGTPYMLFKDSCNRKSN
Sbjct: 357 PGLADCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSN 416
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDE 252
Q+NLGTIK SNLCTEI+EYTS E
Sbjct: 417 QQNLGTIKSSNLCTEIIEYTSPTE 440
Score = 121 bits (292), Expect = 1e-26
Identities = 72/144 (50%), Positives = 91/144 (63%), Gaps = 19/144 (13%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDD-------------------NKTYNFKKLKEVTKTITENLNKII 374
+AVCNLASIAL FV + N+ ++F+KL EVT T+T NLNKII
Sbjct: 441 TAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNKII 500
Query: 375 DVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALE 554
DVNYYPV AK SN+RHRPIGIGVQGLADAFIL+ +P++SPEA + AL+
Sbjct: 501 DVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALK 560
Query: 555 ASCELAAKVWECMIHTTDAPASRG 626
AS ELAA++ + +P S+G
Sbjct: 561 ASTELAARLGPYETY-AGSPVSKG 583
>UniRef50_Q8JKL8 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Heliothis zea virus 1|Rep: Ribonucleoside-diphosphate
reductase - Heliothis zea virus 1
Length = 939
Score = 133 bits (321), Expect = 4e-30
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGL+DCWG+EFE+ Y YE+E R+V +V A+ LWKAI+ AQVETGTPY+L+KD+ NR SN
Sbjct: 359 PGLSDCWGEEFEAKYTAYEQEGRYVRRVDARELWKAIVTAQVETGTPYILYKDTVNRNSN 418
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDE 252
Q++LGTIK SNLCTEIVEY S DE
Sbjct: 419 QRHLGTIKGSNLCTEIVEYASPDE 442
Score = 97.5 bits (232), Expect = 3e-19
Identities = 55/127 (43%), Positives = 72/127 (56%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVC LAS+ L FV+ K +N L + + +T NLNKIID YP+P A KSN +HRP
Sbjct: 443 TAVCVLASVNLPKFVE-GKVFNLNLLAKTVRLVTRNLNKIIDNALYPIPSAAKSNFKHRP 501
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDA 611
IGIGVQG ADA +M + YE +N + AL SC+L A+V +
Sbjct: 502 IGIGVQGYADALAMMGIAYEDSMQLN--RDIFETIYHAALTESCQL-ARVHGVYESYHGS 558
Query: 612 PASRGHI 632
P SRG +
Sbjct: 559 PTSRGEL 565
>UniRef50_O12935 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Nucleopolyhedrovirus|Rep: Ribonucleoside-diphosphate
reductase - Spodoptera exigua MNPV
Length = 770
Score = 128 bits (308), Expect = 2e-28
Identities = 67/126 (53%), Positives = 88/126 (69%), Gaps = 1/126 (0%)
Frame = +3
Query: 252 SAVCNLASIALNMFVD-DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
+AVCNLASIA+N VD D KT+++ LK +TK I NLNKIIDVN+YP E+++SN +HR
Sbjct: 425 TAVCNLASIAVNKCVDVDAKTFDYVLLKHLTKIIVRNLNKIIDVNHYPTAESERSNKKHR 484
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTD 608
PIG+G+QGLADAF+L+ + Y+S +A + ALEASCEL AK+ TD
Sbjct: 485 PIGVGIQGLADAFVLLDIAYDSDDARFVNYSIAETIYFAALEASCEL-AKINGPYESYTD 543
Query: 609 APASRG 626
+P SRG
Sbjct: 544 SPVSRG 549
Score = 104 bits (249), Expect = 2e-21
Identities = 48/84 (57%), Positives = 60/84 (71%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
P LAD +G +FE Y YE + QV+A+ L++ I+E VETG PYML+KD CN SN
Sbjct: 341 PDLADKYGFDFEMRYCDYENAQVYERQVKARDLFRFIVETNVETGGPYMLYKDHCNNFSN 400
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDE 252
QKNLGTIKCSNLC EIV+Y ++E
Sbjct: 401 QKNLGTIKCSNLCAEIVQYCDENE 424
>UniRef50_Q75BW6 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Saccharomycetaceae|Rep: Ribonucleoside-diphosphate
reductase - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 864
Score = 118 bits (283), Expect = 2e-25
Identities = 53/84 (63%), Positives = 66/84 (78%)
Frame = +1
Query: 4 GLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQ 183
GL+DC+G+ FE LY YE+E +V+AQ LW+ I+ +Q ETG P+ML+KD+CN KSNQ
Sbjct: 379 GLSDCYGEAFEQLYVRYERELEPYRRVKAQELWREILLSQTETGGPFMLYKDACNSKSNQ 438
Query: 184 KNLGTIKCSNLCTEIVEYTSDDEV 255
KNLGTIK SNLC EIVEY+S DEV
Sbjct: 439 KNLGTIKSSNLCCEIVEYSSRDEV 462
Score = 111 bits (267), Expect = 2e-23
Identities = 58/129 (44%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 255 AVCNLASIALNMFVD---DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRH 425
AVCNLAS+AL FV D T+++ +L V K +T NL+K ID+ YPVPEA++SN +H
Sbjct: 463 AVCNLASVALPTFVSVTSDAITFDYARLHSVVKVMTRNLDKAIDIGDYPVPEAERSNKKH 522
Query: 426 RPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTT 605
RP+ +GVQGLAD F+LMR P+ EA + + A+E S ELAA+ +
Sbjct: 523 RPLALGVQGLADVFMLMRFPFNGEEAAQMNREIFETIYHAAVETSIELAAE-YGVYASFV 581
Query: 606 DAPASRGHI 632
+PAS+G +
Sbjct: 582 GSPASKGEL 590
>UniRef50_Q9QAL9 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Shrimp white spot syndrome virus|Rep:
Ribonucleoside-diphosphate reductase - White spot
syndrome virus (WSSV)
Length = 848
Score = 109 bits (263), Expect = 5e-23
Identities = 58/131 (44%), Positives = 86/131 (65%), Gaps = 6/131 (4%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDN-----KTY-NFKKLKEVTKTITENLNKIIDVNYYPVPEAKKS 413
+AVCNLASIA+N FV + + Y +++++K V K +T NL+K+IDVN+Y V + + S
Sbjct: 464 TAVCNLASIAVNKFVKYSPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRIS 523
Query: 414 NLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECM 593
N++ RP+G+GVQGLAD F +R+P+ES EA + + GALEASCE+A + E
Sbjct: 524 NMKTRPMGLGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETY 583
Query: 594 IHTTDAPASRG 626
+P S+G
Sbjct: 584 ELFEGSPLSKG 594
Score = 105 bits (251), Expect = 1e-21
Identities = 47/84 (55%), Positives = 64/84 (76%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGL+D G+EF++LYE YE E + V+A+ L+ I A++ETGTPY+ FKD+ NRKSN
Sbjct: 380 PGLSDVHGEEFKALYEKYEAEGKGKEVVKARALFDQINSARIETGTPYVCFKDTINRKSN 439
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDE 252
Q+N+G IK SNLCTEIV+Y+ +E
Sbjct: 440 QENVGIIKSSNLCTEIVQYSDSEE 463
>UniRef50_Q7T6Y8 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Ribonucleoside-diphosphate reductase large chain -
Mimivirus
Length = 881
Score = 100 bits (240), Expect = 3e-20
Identities = 50/109 (45%), Positives = 74/109 (67%), Gaps = 3/109 (2%)
Frame = +3
Query: 255 AVCNLASIALNMFV---DDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRH 425
+VCNL+SI L FV D+ T+N++KL ++++ +T NLN IID+N+YP+ + + +NLR
Sbjct: 508 SVCNLSSICLPRFVKIIDEVPTFNYQKLFKISRILTRNLNNIIDINFYPLDKTRITNLRD 567
Query: 426 RPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
RPIGIGVQGLAD F + + P++S A + K + GAL S +LA
Sbjct: 568 RPIGIGVQGLADVFAMFKTPFDSEIARDLNRKIFETIYYGALTESNKLA 616
Score = 87.8 bits (208), Expect = 2e-16
Identities = 40/78 (51%), Positives = 53/78 (67%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
P L + +G EF Y YE E ++ Q+RA LW I+E+Q+ETG PY++FKD+ N KSN
Sbjct: 423 PNLLNKYGDEFTKEYLKYESEGIYLKQIRAIDLWFKIMESQIETGVPYVMFKDAINDKSN 482
Query: 181 QKNLGTIKCSNLCTEIVE 234
Q N+G + SNLC EIVE
Sbjct: 483 QINIGVVNGSNLCCEIVE 500
>UniRef50_Q6MLM3 Cluster: Ribonucleoside-diphosphate reductase alpha
chain; n=14; Bacteria|Rep: Ribonucleoside-diphosphate
reductase alpha chain - Bdellovibrio bacteriovorus
Length = 801
Score = 95.9 bits (228), Expect = 8e-19
Identities = 46/109 (42%), Positives = 70/109 (64%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVCNL S+ L V+ N +NF+KL +T + L++++D+N+YP+P A+ SN + RP
Sbjct: 444 TAVCNLGSVNLARHVE-NGQFNFEKLARSVRTAVKYLDRVVDINFYPIPTAQDSNHKWRP 502
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
+G+GV GL DA LM+LP++S A + K + AL SCEL+ K
Sbjct: 503 VGLGVMGLQDALFLMKLPFDSAAARDLSAKVQEEIYYNALVTSCELSEK 551
Score = 69.3 bits (162), Expect = 8e-11
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
P D +G+EFE Y E++ ++ Q++A+ L+ +++ +TG +M FKD N K+N
Sbjct: 358 PHFVDTYGEEFEKAYVEAEEKKLYIKQLKARDLYSRMMKTLAQTGNGWMTFKDHANLKAN 417
Query: 181 QKNL--GTIKCSNLCTEIVEYTSDDE 252
Q I SNLCTEI+E TSD E
Sbjct: 418 QTGEAGNVIHLSNLCTEILEVTSDKE 443
>UniRef50_P26685 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=2; African swine fever virus|Rep:
Ribonucleoside-diphosphate reductase large chain -
African swine fever virus (isolate Malawi Lil 20/1)
(ASFV)
Length = 779
Score = 93.5 bits (222), Expect = 4e-18
Identities = 47/105 (44%), Positives = 66/105 (62%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
VCNLA++ L F+ ++ +Y+++ L E +TENL+ IID YYP ++SN+RHRPIG
Sbjct: 439 VCNLAAVNLAAFIRES-SYDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIG 497
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IGV GLAD F +++ + SPEAI GA+ S ELA
Sbjct: 498 IGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELA 542
Score = 62.5 bits (145), Expect = 9e-09
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +1
Query: 25 KEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIK 204
+EF+ LY Y E R+ A+ + K + V+ G PY+ FKD+ NRKSN ++GTI
Sbjct: 358 REFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQVGNPYIGFKDAINRKSNLSHVGTIT 417
Query: 205 CSNLCTEI 228
SNLC EI
Sbjct: 418 NSNLCIEI 425
>UniRef50_O41111 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Chlorovirus|Rep: Ribonucleoside-diphosphate reductase -
Paramecium bursaria Chlorella virus 1 (PBCV-1)
Length = 771
Score = 93.1 bits (221), Expect = 6e-18
Identities = 46/107 (42%), Positives = 71/107 (66%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVC + S+ L +V ++K ++F L++ K + +NL++ IDV YP+ EA+ SN R RP
Sbjct: 453 TAVCVIGSVVLKNYVKNDK-FDFDDLRKNVKILAKNLDRSIDVMSYPIKEAETSNKRRRP 511
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GVQGL D F ++LP++SPEA + + + A+EAS ELA
Sbjct: 512 IGVGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELA 558
Score = 89.0 bits (211), Expect = 1e-16
Identities = 39/84 (46%), Positives = 55/84 (65%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGL D +G E+ LY YE E + V+A+ +W ++ +ETG PY+ KD+ N+K+
Sbjct: 369 PGLTDAFGDEYAELYTRYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDTVNKKNM 428
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDE 252
Q N GTI+ SNLC EI+EYTS +E
Sbjct: 429 QSNAGTIRGSNLCIEILEYTSKEE 452
>UniRef50_A7IY07 Cluster: Putative uncharacterized protein B832R; n=1;
Paramecium bursaria Chlorella virus NY2A|Rep: Putative
uncharacterized protein B832R - Paramecium bursaria
Chlorella virus NY2A (PBCV-NY2A)
Length = 1103
Score = 88.2 bits (209), Expect = 2e-16
Identities = 45/107 (42%), Positives = 68/107 (63%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVC + S+ L +V ++K ++F L++ K + +NL++ IDV YP+ EA+ SN RP
Sbjct: 785 TAVCVIGSVVLKNYVKNDK-FDFDDLRKNVKILAKNLDRSIDVMAYPIKEAETSNKLRRP 843
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GVQGL D F +R Y+SPEA + + + A+EAS ELA
Sbjct: 844 IGVGVQGLQDVFFKLRFSYDSPEARDLNREIFEHIYYAAVEASVELA 890
Score = 76.2 bits (179), Expect = 7e-13
Identities = 33/73 (45%), Positives = 47/73 (64%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGL D +G E+ LYE YE E + V+A+ +W ++ +ETG PY+ KD+ N+K+
Sbjct: 365 PGLTDAFGDEYAELYERYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVNKKNM 424
Query: 181 QKNLGTIKCSNLC 219
Q N GTI+ SNLC
Sbjct: 425 QMNAGTIRGSNLC 437
>UniRef50_Q4J4L6 Cluster: Ribonucleoside-diphosphate reductase; n=3;
cellular organisms|Rep: Ribonucleoside-diphosphate
reductase - Azotobacter vinelandii AvOP
Length = 1338
Score = 88.2 bits (209), Expect = 2e-16
Identities = 42/106 (39%), Positives = 64/106 (60%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
AVCNL SI L ++D + + +KL KT L+ +ID+NYY V A+ +N RHRP+
Sbjct: 978 AVCNLGSINLVNHINDGRL-DTEKLSRTVKTAVRMLDNVIDINYYSVDTARNANFRHRPV 1036
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
G+G+ G DA L + Y S AI ++ ++ + A++ASC+LA
Sbjct: 1037 GLGIMGFQDALYLQHIAYGSEAAIAFADRSMEAISYYAIQASCDLA 1082
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRF-----VXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNR 171
L D G+ FE YE YE ++ + A+ LW+ ++ ETG P++ FKD CN
Sbjct: 890 LHDLTGRAFEERYEYYEALTQYGKIKLFKTIAAKDLWRKMLSMLFETGHPWLTFKDPCNL 949
Query: 172 KSNQKNLGTIKCSNLCTEIVEYTSDDEV 255
+S Q+++G + SNLCTEI TSD E+
Sbjct: 950 RSPQQHVGVVHSSNLCTEITLNTSDSEI 977
>UniRef50_Q9HMU3 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Halobacterium salinarum|Rep: Ribonucleoside-diphosphate
reductase - Halobacterium salinarium (Halobacterium
halobium)
Length = 804
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/109 (37%), Positives = 67/109 (61%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVCNL S+ L +DD + ++L E +T L+ ++D+N+YP A++SN+RHRP
Sbjct: 447 TAVCNLGSVNLARHLDDGDI-DREQLSETVETAMRMLDNVVDLNFYPTENAERSNMRHRP 505
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
+G+GV G DA MR+P S +A++ + + A+ AS +LAA+
Sbjct: 506 VGLGVMGFHDALQQMRVPMASDDALDRADALQEYVAYHAIGASADLAAE 554
Score = 65.3 bits (152), Expect = 1e-09
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKE------NRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCN 168
L + +G +F Y YE RF +V A LW+ ++ ETG P++ FKD CN
Sbjct: 360 LYELYGSDFAERYREYEAMADDGDIQRF-ERVDATDLWRTMLTRLFETGHPWLTFKDPCN 418
Query: 169 RKSNQKNLGTIKCSNLCTEIVEYTSDDE 252
+S Q + GT++ SNLCTEI TS++E
Sbjct: 419 VRSPQDHAGTVRSSNLCTEITLNTSEEE 446
>UniRef50_Q3AEA3 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent, intein-containing; n=2;
Bacteria|Rep: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent, intein-containing -
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 1101
Score = 83.8 bits (198), Expect = 4e-15
Identities = 42/104 (40%), Positives = 63/104 (60%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI L V D + +++ L++ K L+ +IDVN+YP+PE +K + R IG+
Sbjct: 627 CNLGSINLANMVKDGEI-DWEHLEKTVKLAVRFLDNVIDVNHYPLPEIEKMTKKTRKIGL 685
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
GV G AD I + +PY+S EA+N +K ++ + EAS ELA
Sbjct: 686 GVMGFADMLIKLNIPYDSEEALNLADKVMEFINKKSKEASAELA 729
>UniRef50_O84834 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=29; Bacteria|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Chlamydia trachomatis
Length = 1047
Score = 83.4 bits (197), Expect = 5e-15
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEK-----ENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSC 165
PGL D +G+EFE LYE YE+ E R +V A+ LW+ ++ ETG P+M FKD
Sbjct: 595 PGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPS 654
Query: 166 NRKSNQKNLGTIKCSNLCTEIVEYTSDDE 252
N +S Q + G ++CSNLCTEI+ S+ E
Sbjct: 655 NIRSAQDHKGVVRCSNLCTEILLNCSETE 683
Score = 77.4 bits (182), Expect = 3e-13
Identities = 41/107 (38%), Positives = 61/107 (57%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVCNL SI L + + + +KL E L+ +ID+N+YP EAK++N HR
Sbjct: 684 TAVCNLGSINLVQHIVGDGL-DEEKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRA 742
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV G DA + + Y S EA+ + +L + A++ASC LA
Sbjct: 743 IGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLA 789
>UniRef50_Q67KQ2 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Symbiobacterium thermophilum|Rep:
Ribonucleoside-diphosphate reductase - Symbiobacterium
thermophilum
Length = 776
Score = 78.2 bits (184), Expect = 2e-13
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Frame = +3
Query: 261 CNLASIALNMFVD----DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
CNL SI L FV D ++++L EV +T T L+ +ID N YP+P+ + LR R
Sbjct: 282 CNLGSINLANFVKNPYTDRAEVDWERLGEVARTATRFLDNVIDANKYPLPQIAEKALRDR 341
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+G+ G A+ + M LPY+S EA+ N+ + ALE S LA
Sbjct: 342 RIGLGIMGWAEMLVQMGLPYDSEEAVALGNRVMTFIKQKALEESMALA 389
Score = 36.3 bits (80), Expect = 0.71
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 43 YETYEKENRFVX-QVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLC 219
YE N V ++ A+++W ++E +TG P ++F D NR++ ++ I+ +N C
Sbjct: 212 YELINPRNGEVTGKLSAKLVWDKLVENAWKTGEPGIVFIDRINRRNPNNHVEVIEATNPC 271
Query: 220 TE 225
E
Sbjct: 272 GE 273
>UniRef50_A2XAQ8 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Oryza sativa|Rep: Ribonucleoside-diphosphate reductase -
Oryza sativa subsp. indica (Rice)
Length = 676
Score = 78.2 bits (184), Expect = 2e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFK 156
PGLADCWG EF++LY+ YE+E + V AQ LW I++AQ+ETGTPYML+K
Sbjct: 357 PGLADCWGDEFQNLYKKYEREGKAKKVVSAQALWFDILKAQIETGTPYMLYK 408
Score = 34.7 bits (76), Expect = 2.2
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 509 LNQQIFETIYYGSTRGKL*TSSKSMGVYDTYDGCP 613
LN+ IFETIYY + + ++K G Y+TY G P
Sbjct: 412 LNKDIFETIYYHALKASAEIAAKE-GPYETYSGSP 445
>UniRef50_Q39JT6 Cluster: Ribonucleoside-diphosphate reductase;
n=86; Bacteria|Rep: Ribonucleoside-diphosphate reductase
- Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 998
Score = 77.8 bits (183), Expect = 2e-13
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Frame = +3
Query: 255 AVCNLASIALNMFV----DDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLR 422
AVCNL S+ L + D + + KLK L+ +ID+NYY V +A+ SNL+
Sbjct: 603 AVCNLGSVNLVAHLVKQADGSFALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLK 662
Query: 423 HRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
HRP+G+G+ G D L+R PY S A+ ++ ++ A AS ELA
Sbjct: 663 HRPVGMGIMGFQDCLHLLRTPYASEAAVAFADRSMEAVCYYAYHASTELA 712
Score = 74.1 bits (174), Expect = 3e-12
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEK-----ENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSC 165
P L D +G EFE+ Y YE E + ++ A LW+ ++ ETG P++ FKD C
Sbjct: 513 PDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPC 572
Query: 166 NRKSNQKNLGTIKCSNLCTEIVEYTSDDEV 255
N +S Q+++G + SNLCTEI TSD E+
Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDSEI 602
>UniRef50_Q3E5I1 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Chloroflexus|Rep: Ribonucleoside-diphosphate reductase -
Chloroflexus aurantiacus J-10-fl
Length = 822
Score = 76.6 bits (180), Expect = 5e-13
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
VCNL SI L FV D T +++ L++V T L+ +ID N+YP+ + + + R R IG
Sbjct: 312 VCNLGSINLGKFVTDAGTIDWESLRDVVHESTRFLDNVIDANHYPLEQITQLSQRIRRIG 371
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK-----VWECMIHT 602
+GV G AD + + +PY S +AI+ + ++ + AS +LA + WE I
Sbjct: 372 LGVMGWADMLVRLGIPYNSAQAIDLARQVMRFIDEESKVASEQLARERGPFPEWEYSIWG 431
Query: 603 TDAPASR 623
DA +R
Sbjct: 432 PDATCAR 438
>UniRef50_P74911 Cluster: Ribonucleoside-diphosphate reductase; n=5;
Thermoplasmatales|Rep: Ribonucleoside-diphosphate
reductase - Thermoplasma acidophilum
Length = 857
Score = 75.8 bits (178), Expect = 1e-12
Identities = 41/104 (39%), Positives = 57/104 (54%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI L+ +V D K +F +L+E T T L+ +ID N +PV + KK R IG+
Sbjct: 445 CNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANKFPVEQIKKVTRMTRKIGL 504
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
GV G AD I + +PY S EA+ K + + +AS LA
Sbjct: 505 GVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQALA 548
Score = 46.4 bits (105), Expect = 7e-04
Identities = 19/56 (33%), Positives = 35/56 (62%)
Frame = +1
Query: 58 KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
+ + + +++A+ +W AII+ +T P ++F D NRK+ KN+G I+ +N C E
Sbjct: 381 RTKKIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGE 436
>UniRef50_UPI0000F5175D Cluster: hypothetical protein Faci_03000650;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000650 - Ferroplasma acidarmanus fer1
Length = 1136
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/106 (35%), Positives = 58/106 (54%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI L FV+D K +N+++ +E T L ++D N +PV K + R IG+
Sbjct: 815 CNLGSINLAKFVEDGK-FNYERYRETIDVATRFLENVVDANKFPVESIKNMTRKTRKIGL 873
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
G+ G ADA I++ +PY S EA+ +K + S +LAA+
Sbjct: 874 GIMGFADALIMLGIPYNSNEALEFAENVMKTLNDESHMESQKLAAE 919
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 58 KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLC 219
++ + +V+A LW +II+ T P M+F D N+K+ KN+G I+ +N C
Sbjct: 385 RDGKVTGRVKATTLWNSIIDHAWLTADPGMIFLDEINKKNPVKNIGYIESTNPC 438
>UniRef50_Q8R7R2 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Thermoanaerobacter tengcongensis|Rep:
Ribonucleoside-diphosphate reductase -
Thermoanaerobacter tengcongensis
Length = 691
Score = 74.5 bits (175), Expect = 2e-12
Identities = 40/105 (38%), Positives = 62/105 (59%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
VCNL +I L FV++ K NF++L+E K L+ ++D+ Y +P+ K+ + R +G
Sbjct: 272 VCNLGAINLVAFVENGKI-NFEELEETVKIAVRFLDNVLDLGAYVLPQNKEMAQKLRRVG 330
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+G+ GLADA ILM L Y S E++ + ++ A AS ELA
Sbjct: 331 LGLMGLADALILMNLRYGSEESLKATEEIVRRIRDAAYRASVELA 375
>UniRef50_Q6A5Y5 Cluster: Ribonucleoside-diphosphate reductase alpha
chain; n=6; Actinobacteria (class)|Rep:
Ribonucleoside-diphosphate reductase alpha chain -
Propionibacterium acnes
Length = 856
Score = 74.5 bits (175), Expect = 2e-12
Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDD---NKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLR 422
+AVCNLAS+ L + + ++ +L T+ +L+ ++D+ VP+A++SN
Sbjct: 465 TAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEE 524
Query: 423 HRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
+R IG+GV GL D +R+PY+SP+A +++ ++ + A++ S +LAA+
Sbjct: 525 NRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAE 576
Score = 47.6 bits (108), Expect = 3e-04
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKE------NRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDS 162
P L + G +F Y Y ++ RF + A+ ++AI+ + T P++ +KDS
Sbjct: 376 PDLTELTGSDFSKRYAQYVEQAEAGKIKRF-RRTTAREQFRAILVSLQTTSHPWLTWKDS 434
Query: 163 CNRKSNQKNLGTIKCSNLCTEI 228
N ++ N GTI SNLCTEI
Sbjct: 435 INTRALNSNTGTIHSSNLCTEI 456
>UniRef50_A4L245 Cluster: Ribonucleotide reductase large subunit;
n=1; Gryllus bimaculatus nudivirus|Rep: Ribonucleotide
reductase large subunit - Gryllus bimaculatus nudivirus
Length = 683
Score = 73.7 bits (173), Expect = 4e-12
Identities = 32/77 (41%), Positives = 52/77 (67%)
Frame = +1
Query: 25 KEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIK 204
KEFE LYET+ E ++ ++ ++K II+ + TG+PY++F D+ N+ +N K+LG IK
Sbjct: 294 KEFEELYETFVSEQKYTNMYESRKIFKDIIKNILMTGSPYIIFIDNVNKFNNIKHLGKIK 353
Query: 205 CSNLCTEIVEYTSDDEV 255
NLC+EI Y ++D +
Sbjct: 354 TLNLCSEITNYCNEDVI 370
>UniRef50_Q8TQ86 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Methanomicrobia|Rep: Ribonucleoside-diphosphate
reductase - Methanosarcina acetivorans
Length = 558
Score = 73.3 bits (172), Expect = 5e-12
Identities = 39/106 (36%), Positives = 59/106 (55%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL S+ L++FV D K N+ L+E L+ ID+N YPVPE ++ + R IG+
Sbjct: 270 CNLGSLNLSLFVADGKI-NWDFLRETAGKAVRFLDNEIDINVYPVPEIAEATRKTRKIGL 328
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
GV G D + + L Y+S EA+ K ++ A+ S +LAA+
Sbjct: 329 GVMGFHDMLLKLGLSYDSTEAVELAEKLMEQINWAAVRESRKLAAE 374
>UniRef50_Q6R7H4 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Ostreid herpesvirus 1|Rep: Ribonucleoside-diphosphate
reductase - Ostreid herpesvirus 1
Length = 835
Score = 72.5 bits (170), Expect = 9e-12
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 GLADCWGKEFESLYETYEKENRFVXQ-VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
GL + +G++F Y +E + V A+ L+ I TG PY+LFKD+ N +SN
Sbjct: 377 GLEELYGEKFVRAYRAHEANPKIKRTTVSARKLFSDIANMMWSTGEPYILFKDAVNERSN 436
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDEV 255
K+LGTIK SNLC EIV+Y +E+
Sbjct: 437 HKHLGTIKNSNLCCEIVQYCDTNEI 461
Score = 46.8 bits (106), Expect(2) = 6e-07
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +3
Query: 411 SNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
SNL+HRP GIG+QGL D F+ +++PY+S A + GA+ S ++A
Sbjct: 543 SNLKHRPQGIGMQGLHDVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKIA 596
Score = 29.5 bits (63), Expect(2) = 6e-07
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 255 AVCNLASIALNMFVD-DNKTYNFKKLKEVTKTITENLNKIIDVNYY 389
AVCNLA+I ++ FV+ + +F+ + + + +N +ID Y
Sbjct: 462 AVCNLATICVSNFVNVETGEIDFEGIADAAGVACKGINNLIDKQNY 507
>UniRef50_Q6UDJ2 Cluster: Ribonucleoside-diphosphate reductase; n=3;
Alphaherpesvirinae|Rep: Ribonucleoside-diphosphate
reductase - Psittacid herpesvirus 1
Length = 811
Score = 71.3 bits (167), Expect = 2e-11
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
L+D +G+EFE YE E++N + A+ + A+I++ V TGTP+++FK + NR
Sbjct: 381 LSDLYGEEFEKEYELLERKNVGIATYPARDVMFALIKSAVSTGTPFVMFKHAVNRNYFFD 440
Query: 187 NLG-TIKCSNLCTEIVEYTSDDEV 255
G +KCSNLCTEIV T D+ V
Sbjct: 441 MAGRAMKCSNLCTEIVHMTDDESV 464
Score = 48.8 bits (111), Expect = 1e-04
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNK---------TYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKK 410
VCNL S+ L FV T+++ ++ T +N ++ ++ P+ A
Sbjct: 466 VCNLTSLNLAAFVTRRNALPGTPPIGTFDYSSFRDACAVATVFINALMSLSNLPIKRATT 525
Query: 411 SNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCEL 569
N R R IGIGVQG A +L +S EA K + + + SC +
Sbjct: 526 GNERLRSIGIGVQGFHTACLLQGFGLDSVEACRFNGKLFEALALTTFQTSCRI 578
>UniRef50_Q91ES8 Cluster: ORF127 RR1; n=1; Cydia pomonella
granulovirus|Rep: ORF127 RR1 - Cydia pomonella
granulosis virus (CpGV) (Cydia pomonellagranulovirus)
Length = 624
Score = 70.9 bits (166), Expect = 3e-11
Identities = 30/87 (34%), Positives = 49/87 (56%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
L DC+G+E+E LYE + + V LW I+ G PY++++D+ N+ +NQ+
Sbjct: 218 LNDCYGEEYERLYEEMVRRGIQIKSVNVWELWGEIVNCLATNGYPYIVWRDTVNKYNNQQ 277
Query: 187 NLGTIKCSNLCTEIVEYTSDDEVQYAT 267
LG +K NLC E+ ++ +D V T
Sbjct: 278 ALGVVKTLNLCAEVCQHATDSTVDTNT 304
>UniRef50_A2DI13 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Trichomonas vaginalis G3|Rep: Ribonucleoside-diphosphate
reductase - Trichomonas vaginalis G3
Length = 614
Score = 70.9 bits (166), Expect = 3e-11
Identities = 38/103 (36%), Positives = 56/103 (54%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL +I L FV D K +FK L+EVT+T L+ ++ + +PV +R IG+
Sbjct: 310 CNLGAINLEKFVVDGKI-DFKHLEEVTRTAIRMLDNVVSLTKFPVQRVTDMFTNNRRIGL 368
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCEL 569
G+ GLAD LM+LPY+S E + +K A++ S L
Sbjct: 369 GIMGLADLLFLMKLPYDSEEGRACAEEVMKCVQDSAIDESKRL 411
>UniRef50_A6QCU9 Cluster: Ribonucleoside-diphosphate reductase,
alpha subunit; n=15; Epsilonproteobacteria|Rep:
Ribonucleoside-diphosphate reductase, alpha subunit -
Sulfurovum sp. (strain NBC37-1)
Length = 789
Score = 69.7 bits (163), Expect = 6e-11
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQ--VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
L + +G+EFE Y E + + + + A+ LWK I+ + ETG P++ FKD+ NR +
Sbjct: 355 LTELYGEEFEKRYVELEHSDADITREVISAKGLWKEILRSYFETGNPFLTFKDAANRANP 414
Query: 181 QKNLGTIKCSNLCTEIVEYTS 243
K++G I+ SNLCTEI + T+
Sbjct: 415 NKHVGIIRSSNLCTEIFQNTA 435
Score = 60.5 bits (140), Expect = 4e-08
Identities = 35/107 (32%), Positives = 60/107 (56%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVCNLASI L+ K + + + V T L+ +ID+N+YP+ + K++N + R
Sbjct: 495 TAVCNLASINLS------KIHTKEDIARVVPTAVRMLDNVIDLNFYPLAKVKRTNEKSRS 548
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV G A ++ + S + I++ ++ + A+EAS LA
Sbjct: 549 IGLGVMGEAQMLAENQIAWGSHDHFTKIDEVMESVSYYAIEASSNLA 595
>UniRef50_O26748 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
Ribonucleoside-diphosphate reductase - Methanobacterium
thermoautotrophicum
Length = 703
Score = 69.7 bits (163), Expect = 6e-11
Identities = 37/104 (35%), Positives = 56/104 (53%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL S+ L++ V + N++KL+ L+ +IDVN YP+ ++ LR R IG+
Sbjct: 411 CNLGSVNLSLMVGPSGI-NWEKLRRTIHVAVHFLDNVIDVNSYPLRPVEEMTLRTRKIGL 469
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
GV G AD I + +PY S A+ + + + A AS ELA
Sbjct: 470 GVMGFADMLIKLGIPYNSVAALEVAGRVMSFISSEARRASMELA 513
Score = 39.9 bits (89), Expect = 0.058
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 58 KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLC 219
+ V V ++V+ K I+EA +G P +LF+D NR + LG I+ +N C
Sbjct: 213 RNGEVVDSVESRVILKRIVEAAWRSGDPGILFEDRINRYNPTPQLGRIEATNPC 266
>UniRef50_Q67SN6 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Firmicutes|Rep: Ribonucleoside-diphosphate reductase -
Symbiobacterium thermophilum
Length = 782
Score = 68.9 bits (161), Expect = 1e-10
Identities = 38/107 (35%), Positives = 62/107 (57%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
VCNLASI L+ K + +K+ EV L+ +ID+N+YPVP+AK +N ++R IG
Sbjct: 510 VCNLASINLS------KVHTEEKIAEVVPLAIRMLDNVIDLNFYPVPQAKITNKKYRAIG 563
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
+GV G + + +ES + + ++ +L A++ S ELAA+
Sbjct: 564 LGVHGYHQMLAELGIHWESEDHLRKADEVFELLNYYAVKTSIELAAE 610
Score = 67.3 bits (157), Expect = 3e-10
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Frame = +1
Query: 7 LADCWGKEFESLY----ETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRK 174
L D WG+E+E Y E + VRA+ + KA++++Q ETG P++ F+D+ NR
Sbjct: 403 LEDAWGEEWERRYRLCVEAAHADKLDATVVRARQVAKAMLKSQYETGGPFLFFRDTVNRL 462
Query: 175 SNQKNLGTIKCSNLCTEIVEYTS 243
+ K+ G + CSNLCTEI + S
Sbjct: 463 NPNKHAGMVYCSNLCTEIAQNQS 485
>UniRef50_A0RYG3 Cluster: Ribonucleoside-diphosphate reductase; n=3;
Crenarchaeota|Rep: Ribonucleoside-diphosphate reductase
- Cenarchaeum symbiosum
Length = 881
Score = 68.9 bits (161), Expect = 1e-10
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Frame = +3
Query: 261 CNLASIALNMFV----DDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
CNL SI L V D +++++ +E+ + T L+ +IDVN YPV E +++ R
Sbjct: 479 CNLGSINLARLVKRKADGEFEFDWQRYEEMIRKTTRFLDNVIDVNLYPVKEIDRASKESR 538
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV G+AD +R+PY S E + +K + T ++E S LA
Sbjct: 539 RIGLGVMGVADLLYKLRIPYNSKEGYDLQSKLAEALTYYSMEESVALA 586
>UniRef50_P55982 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=11; Campylobacterales|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Helicobacter pylori (Campylobacter pylori)
Length = 788
Score = 68.9 bits (161), Expect = 1e-10
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQ-VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQ 183
L + +G++FE Y YEK+ + + + + A+ LWK I+ E G P++ FKD+ NR +
Sbjct: 355 LTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPN 414
Query: 184 KNLGTIKCSNLCTEIVEYTS 243
+ G I+ SNLCTEI + T+
Sbjct: 415 AHAGIIRSSNLCTEIFQNTA 434
Score = 59.3 bits (137), Expect = 9e-08
Identities = 35/107 (32%), Positives = 59/107 (55%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVCNLASI L+ K + +K V + L+ +ID+N+YP + K +NL++R
Sbjct: 494 TAVCNLASINLS------KINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVKATNLQNRA 547
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV G A ++ + S E + I+ ++ + A++ S LA
Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLA 594
>UniRef50_Q647Z9 Cluster: Ribonucleoside-diphosphate reductase; n=3;
cellular organisms|Rep: Ribonucleoside-diphosphate
reductase - uncultured archaeon GZfos9C4
Length = 914
Score = 68.5 bits (160), Expect = 1e-10
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = +3
Query: 261 CNLASIALNMFVDDNK-TYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
CNL SI ++ FV ++++L+EV + L+ +IDVN YP+PE +K +R IG
Sbjct: 608 CNLGSINVSKFVKSGDGEIDWERLREVICISVKFLDDVIDVNRYPLPEIEKMTKANRKIG 667
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCEL 569
+G+ G A+ I + + Y+S +A++ K ++ T A S EL
Sbjct: 668 LGIMGFAELLIKLGIAYDSKDALSTGEKLMQFITNEARRCSTEL 711
Score = 33.1 bits (72), Expect = 6.6
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 73 VXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLC 219
V +++A+ ++ I+ +TG P ++F D NR++ +G I+ +N C
Sbjct: 242 VKRIKAREVFNEIVTYAWKTGDPGIVFMDEINRRNTIPAVGKIEATNPC 290
>UniRef50_Q6QXF6 Cluster: ORF37; n=4; Baculoviridae|Rep: ORF37 -
Agrotis segetum granulosis virus (AsGV) (Agrotis
segetumgranulovirus)
Length = 615
Score = 68.1 bits (159), Expect = 2e-10
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
L DC+G+E+ESLY ++ +V ++ A + +I E G PY++++D N +N +
Sbjct: 226 LNDCYGEEYESLYWRMVEKKLYVKKMYATQVLGELISCLTENGFPYVVWRDHVNMFNNHR 285
Query: 187 NLGTIKCSNLCTEIVEYTSDDEVQYAT 267
+LGTI+ NLCTEI ++ D T
Sbjct: 286 DLGTIQTLNLCTEICQHAGSDSSSMCT 312
>UniRef50_Q6AJC4 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Desulfotalea psychrophila|Rep:
Ribonucleoside-diphosphate reductase - Desulfotalea
psychrophila
Length = 785
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/80 (40%), Positives = 50/80 (62%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI L FV +++ ++ +L ++ KT T L+ +ID N +P+PE + L+ R IG+
Sbjct: 346 CNLGSINLGNFVKNDEV-DYSRLGQIVKTATCFLDNVIDCNVFPIPEIGEMTLKTRKIGL 404
Query: 441 GVQGLADAFILMRLPYESPE 500
G+ GL D I + +PY S E
Sbjct: 405 GIMGLHDLLIQLAIPYGSEE 424
>UniRef50_Q6VMN2 Cluster: Ribonucleoside-diphosphate reductase;
n=10; Tortoise herpesvirus|Rep:
Ribonucleoside-diphosphate reductase - Tortoise
herpesvirus
Length = 796
Score = 67.3 bits (157), Expect = 3e-10
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
LA +GKEFE Y E V Q+ + L II + + TG+P+++FKDSCNR
Sbjct: 355 LAKLYGKEFEDEYHRLETAGMAVRQMPIKELLFKIIRSAIMTGSPFIMFKDSCNRHYYMD 414
Query: 187 NLG-TIKCSNLCTEIVEYTSDD 249
G I+ SNLCTEI+ +T D
Sbjct: 415 TQGQAIRGSNLCTEIIHHTEPD 436
Score = 39.5 bits (88), Expect = 0.076
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = +3
Query: 303 NKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRL 482
++ +NF+KL E T +N +ID + +P + + R +GIG QGL ++
Sbjct: 481 HRYFNFEKLTEAVTAATIFINVMIDRSVHPTTKTQNGAKNFRSMGIGFQGLNTLCWILGE 540
Query: 483 PYESPEAIN*INKYLKLFTMGALEASCEL 569
+P+A + + A EAS EL
Sbjct: 541 TLVTPKARKLGKTICEAMYLSAAEASNEL 569
>UniRef50_A5FSC1 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; n=36; cellular
organisms|Rep: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent - Dehalococcoides sp. BAV1
Length = 866
Score = 66.9 bits (156), Expect = 4e-10
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Frame = +3
Query: 261 CNLASIALNMFVD---DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
CNL SI L+ V T ++KKL V K+ L+ +IDVN +P+P+ ++ + R
Sbjct: 406 CNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIEEMTKKSRK 465
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
IG+GV G AD + + +PY S +I + + A + S ELA +
Sbjct: 466 IGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSSELAVE 514
>UniRef50_Q9UYA0 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Pyrococcus|Rep: Ribonucleoside-diphosphate reductase -
Pyrococcus abyssi
Length = 2122
Score = 66.9 bits (156), Expect = 4e-10
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Frame = +3
Query: 261 CNLASIALNMFV--DDN-KTY-NFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
CNLASI L FV D+N K Y ++ + V + + + L+ IDVN +P+PE + R
Sbjct: 1691 CNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNSIDVNKFPLPEIDYNTKLTR 1750
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
IG+G+ GLADA + +PY S E + K + T A + S E A K
Sbjct: 1751 RIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSIEAAKK 1800
>UniRef50_P95484 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Thermococcaceae|Rep: Ribonucleoside-diphosphate reductase
- Pyrococcus furiosus
Length = 1740
Score = 66.9 bits (156), Expect = 4e-10
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Frame = +3
Query: 261 CNLASIALNMFV--DDN-KTY-NFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
CNLASI L FV D+N K Y ++ + V + + + L+ IDVN +P+PE + R
Sbjct: 1308 CNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNSIDVNKFPLPEIDYNTKLTR 1367
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
IG+G+ GLADA + +PY S E + K + T A + S E A K
Sbjct: 1368 RIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKK 1417
>UniRef50_A3QTY4 Cluster: Ribonucleotide reductase large subunit;
n=1; Oryctes rhinoceros virus|Rep: Ribonucleotide
reductase large subunit - Oryctes rhinoceros virus
Length = 737
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
L + G E++ +Y+ + + N + +V + L ++ ETG+PY+++ D+ NR SN K
Sbjct: 328 LCEFTGDEYKRMYKRFVEANLYTNKVSSSALMDDLVTCISETGSPYVVWSDNVNRFSNHK 387
Query: 187 NLGTIKCSNLCTEIVEYTS 243
+LG IK NLC EI Y S
Sbjct: 388 HLGKIKTLNLCAEIANYAS 406
>UniRef50_Q8VKI9 Cluster: Ribonucleoside-diphosphate reductase;
n=13; Mycobacterium|Rep: Ribonucleoside-diphosphate
reductase - Mycobacterium tuberculosis
Length = 735
Score = 65.3 bits (152), Expect = 1e-09
Identities = 36/104 (34%), Positives = 56/104 (53%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI L + D + ++ +L+EV L+ +IDV+ YP PE ++ R IG+
Sbjct: 431 CNLGSINLARMLADGRV-DWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGL 489
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
GV GLA+ + +PY+S EA+ + ++ A AS LA
Sbjct: 490 GVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLA 533
Score = 32.7 bits (71), Expect = 8.8
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 58 KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEI 228
+ + V ++ A L+ AI +A G P ++F D+ NR + G I+ +N C E+
Sbjct: 367 RTGKIVARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEV 423
>UniRef50_O83972 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=13; Bacteria|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Treponema pallidum
Length = 845
Score = 65.3 bits (152), Expect = 1e-09
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Frame = +3
Query: 258 VCNLASIAL-NMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
VCNLAS+ L N+ + D+K +L+EV + L+ +ID+ YYPVP A+ +N +R I
Sbjct: 573 VCNLASLVLSNIDLSDDK-----ELREVVRVAVRALDNVIDLTYYPVPYAQVTNAYYRAI 627
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
G+GV G + +ES E + ++ + A+EAS +A
Sbjct: 628 GLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIA 673
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQ-VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQ 183
L D + +E+E Y K+ R + + + L + ++++ VETGTP+ ++D NR +
Sbjct: 465 LEDFYAEEWEKRYWDCVKDARISKRTIPIKELVRLVLKSVVETGTPFAFYRDHANRANPN 524
Query: 184 KNLGTIKCSNLCTEIVEYTS 243
+ G I CSNLCTEI + S
Sbjct: 525 GHRGIIYCSNLCTEIAQNMS 544
>UniRef50_O66503 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=1; Aquifex aeolicus|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Aquifex aeolicus
Length = 801
Score = 65.3 bits (152), Expect = 1e-09
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 4 GLADCWGKEFESLYETYEKE--NRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKS 177
GL D +G+EFE Y E+ + +V + LWK ++ ETG PY+ F+D NRK+
Sbjct: 412 GLEDFYGEEFEKWYLELEENLPSYAKKKVNSFELWKRLLTVAFETGEPYIFFRDEANRKN 471
Query: 178 NQKNLGTIKCSNLCTEIVEYTS 243
K+ G + SNLC EIV+ S
Sbjct: 472 PNKHTGMVYSSNLCHEIVQTMS 493
Score = 65.3 bits (152), Expect = 1e-09
Identities = 36/105 (34%), Positives = 58/105 (55%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
VCNL S+ L K + +++KEV + L+ +I++N+Y +PEA+ +N R+R IG
Sbjct: 520 VCNLGSVNLG------KVHTEEEIKEVLPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIG 573
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IGV + + +ES E + +K +L AL+ S ELA
Sbjct: 574 IGVSNYHYCLVKNGIKWESEEHLKFADKLFELIAFYALKGSLELA 618
>UniRef50_Q2VSI0 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Ovine herpesvirus 2|Rep: Ribonucleoside-diphosphate
reductase - Ovine herpesvirus 2
Length = 785
Score = 63.7 bits (148), Expect = 4e-09
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
L +G+EF+ YE +E R+V QV + L +II ++TG+PY+++KD+CN ++
Sbjct: 329 LPHLYGEEFKEEYERLVRERRYVGQVIIKSLLFSIINTIIKTGSPYIIYKDACNAHHWKE 388
Query: 187 NLG-TIKCSNLCTEIVEYTSDD 249
G I +NLC E+++Y D
Sbjct: 389 MRGQAIASANLCAEVIQYPGRD 410
Score = 33.1 bits (72), Expect = 6.6
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 393 VPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEA 503
V E + R R +GIGV GLAD F M Y P A
Sbjct: 481 VTEGMQRGQRERSMGIGVHGLADVFAEMGYSYLDPAA 517
>UniRef50_Q5KX82 Cluster: Ribonucleoside-diphosphate reductase; n=8;
Firmicutes|Rep: Ribonucleoside-diphosphate reductase -
Geobacillus kaustophilus
Length = 857
Score = 63.7 bits (148), Expect = 4e-09
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +3
Query: 255 AVCNLASIALNMFVD-DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+VCNLA+I L VD + K +++KLK + + +ID Y + E KK L R
Sbjct: 487 SVCNLAAINLANMVDKERKVIDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERR 546
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV GLAD I Y S E +++ + A AS ELA
Sbjct: 547 IGLGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELA 593
>UniRef50_A0B8R8 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Methanomicrobia|Rep: Ribonucleoside-diphosphate
reductase - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 688
Score = 63.3 bits (147), Expect = 5e-09
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL S+ L+ V+ + ++ +L+E + L+ +ID N +P+ + + + LR R IG+
Sbjct: 394 CNLGSVNLSRMVERGEI-SWDRLEETVRLAVRFLDDVIDANRFPLKQIEDATLRTRKIGL 452
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCEL 569
GV G A+ I + + Y S +A+ + + T A E SC L
Sbjct: 453 GVMGFAEMLIQLGVSYASQDALRIAEELMAFITKTAREESCAL 495
>UniRef50_P74240 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=2; Chroococcales|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Synechocystis sp. (strain PCC 6803)
Length = 767
Score = 62.9 bits (146), Expect = 7e-09
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKEN----RFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRK 174
LA+ WG++FE Y E ++ A+ L+K I+ QVETG PY+ FKD+ N+
Sbjct: 388 LAELWGEQFEGAYREIESNLDTTITLYKRINARELFKQIMRTQVETGMPYLSFKDTINKA 447
Query: 175 SNQKNLGTIKCSNLCTE 225
+ K+LG I +NLC E
Sbjct: 448 NPNKHLGYIPGTNLCCE 464
Score = 39.5 bits (88), Expect = 0.076
Identities = 25/83 (30%), Positives = 39/83 (46%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL S+ L + + + V++ L+ I++ P +AK N ++R IG+
Sbjct: 478 CNLVSLNL-------ANLDLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGV 530
Query: 441 GVQGLADAFILMRLPYESPEAIN 509
G GLAD RL Y+ IN
Sbjct: 531 GAMGLADWLAKRRLNYDELADIN 553
>UniRef50_Q18UV0 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Bacteria|Rep: Ribonucleoside-diphosphate reductase -
Desulfitobacterium hafniense (strain DCB-2)
Length = 1153
Score = 62.5 bits (145), Expect = 9e-09
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = +3
Query: 261 CNLASIALNMFVDDNK---TYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
CNL SI L + V + ++++L ++T+ T L+ +I+ N YP+P ++ +R
Sbjct: 661 CNLGSINLKLMVTEKNGKVVVDWERLGQITRLATRFLDNVIEANTYPLPSIEEMVKGNRK 720
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV G AD IL++ Y S +A+ K + A S LA
Sbjct: 721 IGLGVMGFADMLILLQTSYASEDAVEYAEKVMNFIQTEARLESQRLA 767
>UniRef50_Q4C9K9 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Cyanobacteria|Rep: Ribonucleoside-diphosphate reductase
- Crocosphaera watsonii
Length = 1116
Score = 62.1 bits (144), Expect = 1e-08
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Frame = +1
Query: 7 LADCWGKEFESLYETYE----KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRK 174
LA+ WG++FE Y E +E +V A+ L+K I+ +QVETG PY+ FKD+ N+
Sbjct: 390 LAELWGEKFEEAYGLIEAELDREITLYKRVNARELFKTIMRSQVETGMPYLAFKDTINKA 449
Query: 175 SNQKNLGTIKCSNLC 219
+ K++G I NLC
Sbjct: 450 NPNKHVGYIPGVNLC 464
Score = 39.1 bits (87), Expect = 0.10
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL S+ L ++ Y L ++ I +N ID+ P +AK N R+R +G+
Sbjct: 827 CNLVSLNLANIEEEELDY----LCNISVRILDNT---IDITNPPFNDAKAHNDRYRTVGV 879
Query: 441 GVQGLADAFILMRLPYES 494
G GLAD L YE+
Sbjct: 880 GCMGLADWLAKKGLTYEN 897
>UniRef50_Q97ZH9 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Sulfolobaceae|Rep: Ribonucleoside-diphosphate reductase
- Sulfolobus solfataricus
Length = 841
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = +3
Query: 261 CNLASIALNMFV---DDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
CNL SI L FV D ++ L E+ + L+ +ID N YP+ + + + R R
Sbjct: 464 CNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVRFLDNVIDANRYPLKQIEDATKRTRK 523
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+G+GV GLA FI + + Y+S +AI + K A +AS E+A
Sbjct: 524 VGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFYHAYKASIEIA 570
Score = 37.5 bits (83), Expect = 0.31
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 58 KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
KE V V A+ L+ I++ ++G P +LF D+ NR+ LG I +N C E
Sbjct: 400 KEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYLGKINATNPCGE 455
>UniRef50_UPI00015BC77F Cluster: UPI00015BC77F related cluster; n=1;
unknown|Rep: UPI00015BC77F UniRef100 entry - unknown
Length = 1005
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/90 (33%), Positives = 50/90 (55%)
Frame = +3
Query: 303 NKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRL 482
N T++++K K V + L+ +ID NYY + +K + R IG+G G D ++L
Sbjct: 513 NNTFDWEKFKAVIRKAIRFLDNVIDANYYALEAVEKGTKQSRKIGLGFMGYQDMIEKLKL 572
Query: 483 PYESPEAIN*INKYLKLFTMGALEASCELA 572
P +S EA+ ++K + + A+E S ELA
Sbjct: 573 PVDSKEALKLLDKIGETMSYVAIETSVELA 602
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVX----QVRAQVLWKAIIEAQVETGTPYMLFKDSCN 168
P L +GK+F Y ++ +++A L+K IE ++TG P+ FKD N
Sbjct: 383 PKLVSTYGKKFSREYSKCIRKALSGKIRHKKIKAVELFKEAIENTIQTGEPWYTFKDPIN 442
Query: 169 RKSNQKNLGTIKCSNLCTEIVEYTSDDEVQ 258
+ K+ GTI +NLCTE + ++ D ++
Sbjct: 443 IRHPNKHTGTILTTNLCTEQLLVSTYDSIE 472
>UniRef50_Q5SM68 Cluster: Ribonucleoside-diphosphate reductase; n=5;
Thermus thermophilus|Rep: Ribonucleoside-diphosphate
reductase - Thermus thermophilus (strain HB8 / ATCC 27634
/ DSM 579)
Length = 2202
Score = 60.5 bits (140), Expect = 4e-08
Identities = 32/104 (30%), Positives = 59/104 (56%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
C+L ++ L +V D + + ++ + +T L+ ++DVN + +P+ + + + R +G+
Sbjct: 1306 CDLGAMNLAAYVKDGE-FQMEEFRRDVRTAIRFLDNVLDVNKFALPDNEMAAKKLRRLGL 1364
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
G+ GLADA I M LPY+S EA + + + A+ AS LA
Sbjct: 1365 GLMGLADALIKMGLPYDSEEARRKVYEIVSAMREEAIRASEALA 1408
>UniRef50_A5TVY2 Cluster: Ribonucleoside-diphosphate reductase; n=3;
Fusobacterium nucleatum|Rep: Ribonucleoside-diphosphate
reductase - Fusobacterium nucleatum subsp. polymorphum
ATCC 10953
Length = 755
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQ--VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
L + +G EFE+LYE E + + + A+ L+K+I++ Q+ETG PY+ FKD N ++
Sbjct: 369 LCELYGYEFENLYEKIENDPNIKLKKVLSAKELFKSIMKTQLETGMPYIFFKDRANEVNH 428
Query: 181 QKNLGTIKCSNLCTE 225
++G I NLC E
Sbjct: 429 NSHMGMIGNGNLCME 443
Score = 48.4 bits (110), Expect = 2e-04
Identities = 34/104 (32%), Positives = 52/104 (50%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI L + +L++ L+ ID+ P+ E+ K NL +R IG+
Sbjct: 475 CNLISINLAELTSE-------ELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYRTIGV 527
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
G GLAD + YE E+IN IN+ + + +++AS LA
Sbjct: 528 GAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLA 569
>UniRef50_Q9IBT4 Cluster: Ribonucleoside-diphosphate reductase; n=6;
Mardivirus|Rep: Ribonucleoside-diphosphate reductase -
Meleagrid herpesvirus 1 (MeHV-1) (Turkey herpesvirus)
Length = 822
Score = 59.3 bits (137), Expect = 9e-08
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 25 KEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLG-TI 201
+EFE YE E E V + + + AII++ TG+P++LFKD+CNR G I
Sbjct: 407 EEFEKEYERLESEGLGVASIPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAI 466
Query: 202 KCSNLCTEIVEYT 240
SNLCTEI++ T
Sbjct: 467 AGSNLCTEIIQKT 479
Score = 52.0 bits (119), Expect = 1e-05
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Frame = +3
Query: 252 SAVCNLASIALNMFV---DDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLR 422
+ VC+LASI L V D N+ ++F L+ + T +N I++ + P ++ R
Sbjct: 484 NGVCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRER 543
Query: 423 HRPIGIGVQGLADAFILMRLPYESPEAIN*INKYL-KLFTMGALEASCELAAK 578
+R +GIGVQG AF+ M L E +NK + + + A+ SCE +
Sbjct: 544 NRSMGIGVQGFHTAFLSMGLDL-CDERARSLNKLIFEFMLLEAMTVSCEFCER 595
>UniRef50_Q5LNK9 Cluster: Ribonucleoside-diphosphate reductase,
putative; n=22; Alphaproteobacteria|Rep:
Ribonucleoside-diphosphate reductase, putative -
Silicibacter pomeroyi
Length = 760
Score = 58.8 bits (136), Expect = 1e-07
Identities = 34/103 (33%), Positives = 53/103 (51%)
Frame = +3
Query: 264 NLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIG 443
NLA + N F +D + + L+++ T ++ ++D + +P+PE R IG+G
Sbjct: 285 NLARLVSNPF-EDAAELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAEAQNKRRIGLG 343
Query: 444 VQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
V GLADA +++ L Y S EA +L A AS ELA
Sbjct: 344 VTGLADALLMLGLRYGSDEAAKQTEDWLHAIARAAYLASVELA 386
Score = 34.3 bits (75), Expect = 2.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
V A+ LW I++A + P ++F D N +N + TI +N C E
Sbjct: 223 VEARTLWNKIMQATYDYAEPGVIFIDRINAANNLNYVETIAATNPCGE 270
>UniRef50_A3H704 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Caldivirga maquilingensis IC-167|Rep:
Ribonucleoside-diphosphate reductase - Caldivirga
maquilingensis IC-167
Length = 877
Score = 58.8 bits (136), Expect = 1e-07
Identities = 33/104 (31%), Positives = 54/104 (51%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI L +++ N + ++ L L+ +ID N +P ++N R IG+
Sbjct: 486 CNLGSINLTKYINGN-SIDWVSLANDIMLAVRFLDDVIDSNQHPHEYLDRANKASRRIGL 544
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
G+ G AD + + +PY+SP+AI + + A+ AS ELA
Sbjct: 545 GINGWADVLVSLDIPYDSPKAIALADVVMGFVARVAVRASVELA 588
>UniRef50_A3JKM6 Cluster: Ribonucleoside reductase; n=1;
Marinobacter sp. ELB17|Rep: Ribonucleoside reductase -
Marinobacter sp. ELB17
Length = 1087
Score = 58.0 bits (134), Expect = 2e-07
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKT----YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
C L S+ L MFVDD T +N++K K+V T L+ ++++N P+ + + R
Sbjct: 706 CLLGSVNLTMFVDDPFTDKASFNYEKYKKVVGIFTRMLDNVVEINGLPLAQQRHEITYKR 765
Query: 429 PIGIGVQGLADAFILMRLPYESPEAI 506
G+G+ GL ++R+PY S E++
Sbjct: 766 RHGMGILGLGSTLAMLRMPYGSEESV 791
>UniRef50_Q9PE32 Cluster: Ribonucleoside-diphosphate reductase;
n=34; root|Rep: Ribonucleoside-diphosphate reductase -
Xylella fastidiosa
Length = 830
Score = 57.6 bits (133), Expect = 3e-07
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +1
Query: 31 FESLYETYEKENRFVXQ-VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKC 207
F YE + R + V+A ++K I+ +Q+ETG P+M ++D NRK+ K++G +
Sbjct: 456 FRRKYEDVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYS 515
Query: 208 SNLCTEIVE 234
SNLCTEI++
Sbjct: 516 SNLCTEILQ 524
Score = 45.6 bits (103), Expect = 0.001
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +3
Query: 258 VCNLASIALNMFVD-DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
VCNL+SI L + L+ + L+ +ID+N PVP+A +N ++R I
Sbjct: 552 VCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLLPVPQATITNQKYRAI 611
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
G+G G + + SPEA + + + AS ELA
Sbjct: 612 GLGTFGWHHLLAQKAIHWNSPEAEQYSDALYERINYLTIRASMELA 657
>UniRef50_A1YJD3 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Spodoptera frugiperda MNPV|Rep:
Ribonucleoside-diphosphate reductase - Spodoptera
frugiperda nuclear polyhedrosis virus (SfNPV)
Length = 839
Score = 57.2 bits (132), Expect = 4e-07
Identities = 34/103 (33%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Frame = +3
Query: 270 ASIALNMFVD-DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGV 446
AS+A++ V+ + K +++ L+ +TK + +L+ +I++N YP+ K N +H I +G+
Sbjct: 519 ASVAVDKCVNLETKQFDYNLLRRITKNVVRDLDAMININMYPLD--KFENKKHN-IAVGM 575
Query: 447 QGLADAFILMRLPYESPEAIN*INKYL-KLFTMGALEASCELA 572
QG A+ +L+ ++ EA +NK + + GA+EAS ELA
Sbjct: 576 QGFAETLLLLGYTFDMVEA-KALNKLIAETIYYGAIEASNELA 617
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCN 168
L+ +G +FE Y +EKE+ V+A+ L K II+ G ++FKD+ N
Sbjct: 448 LSSKYGDKFEQAYVKFEKEHINAKIVKAKDLLKLIIDTMRINGNLSVMFKDTFN 501
>UniRef50_O33839 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Thermotogaceae|Rep: Ribonucleoside-diphosphate reductase
- Thermotoga maritima
Length = 827
Score = 57.2 bits (132), Expect = 4e-07
Identities = 31/103 (30%), Positives = 52/103 (50%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI + F + N + + L+E+ + L+ +IDVN +P+ + K+ R +G+
Sbjct: 333 CNLGSIDVAKFYN-NGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGL 391
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCEL 569
G+ G AD + +PY S EA + + + A S EL
Sbjct: 392 GIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYEL 434
>UniRef50_A7I485 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribonucleoside-diphosphate
reductase, adenosylcobalamin-dependent - Methanoregula
boonei (strain 6A8)
Length = 741
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/107 (29%), Positives = 59/107 (55%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
C L SI L V + ++ L++ ++ T L+ +I+ N +P+P+ ++ + R IG+
Sbjct: 266 CVLGSINLAACVREG-AFDEDLLRDTSRMATRFLDLVIEKNVFPIPQIAEATRKTRKIGL 324
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKV 581
GV G+ DA +++ L Y+S + +K+ T A+E S LA K+
Sbjct: 325 GVMGVHDAMLMLGLSYDSEKGRAWCEWVMKVITETAIEESHRLAEKL 371
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 97 LWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
+W I+E + G P +LF D NR + LG I +N C E
Sbjct: 215 IWNGIVEGIWKNGEPGILFYDEINRHNPTPQLGEIDTTNPCGE 257
>UniRef50_Q5P1D5 Cluster: Ribonucleotide reductase, Coenzyme
B12-dependent; n=6; Betaproteobacteria|Rep:
Ribonucleotide reductase, Coenzyme B12-dependent -
Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum
(strain EbN1))
Length = 963
Score = 56.4 bits (130), Expect = 6e-07
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Frame = +3
Query: 261 CNLASIALNMFVD----DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
C+L SI L F+ D +++ +V L+ ++DV ++P+P+ + R
Sbjct: 312 CDLGSINLTPFIKHPFTDKAEFDYPAFGKVVDVAIRMLDNVLDVTHWPLPQQENEAQSKR 371
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTD 608
+G+G GL DA I++ Y+SP+A K + A AS ELA + + D
Sbjct: 372 RVGLGFTGLGDALIMLCKRYDSPDARAVATKISEYMRDRAYLASVELAKERGAFPLFNAD 431
Query: 609 APASRGHITVR 641
S G+ R
Sbjct: 432 LYLSGGNFASR 442
>UniRef50_Q2RP92 Cluster: Ribonucleotide reductase large subunit;
n=1; Rhodospirillum rubrum ATCC 11170|Rep:
Ribonucleotide reductase large subunit - Rhodospirillum
rubrum (strain ATCC 11170 / NCIB 8255)
Length = 786
Score = 56.4 bits (130), Expect = 6e-07
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKT----YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
CNL + L + V D T ++ +L EV L+ ++DV+ +PV + K R
Sbjct: 296 CNLGCVNLAVLVRDPFTPQARFDDARLAEVAAIGVRFLDNVLDVSNFPVEDQAKEAQAKR 355
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
+G+G+ GL +A ++ L Y SP AI + + L A AS ELA +
Sbjct: 356 RLGLGIMGLGNALQMLGLRYGSPAAIAETRRIMALLRDAAYRASAELAGE 405
Score = 36.7 bits (81), Expect = 0.54
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 79 QVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
++ A+ LW+ II + P ++F D N ++N TI C+N C E
Sbjct: 239 RLSARALWEKIIRTTYDHAEPGVIFIDRVNERNNLAYCETISCTNPCGE 287
>UniRef50_A6NX38 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Bacteroides capillosus ATCC 29799|Rep:
Ribonucleoside-diphosphate reductase - Bacteroides
capillosus ATCC 29799
Length = 784
Score = 56.4 bits (130), Expect = 6e-07
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Frame = +3
Query: 261 CNLASIAL--NMFVDDNKTYNFK-KLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
CNL SI L ++ +D + K KL +T L+ +I+VN YP+PE R
Sbjct: 282 CNLGSINLVTHLKEEDGRWVLDKDKLTATIRTAVHFLDNVIEVNKYPLPEIDAMTRSTRK 341
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV G AD + M +PY S + + + ++L E S LA
Sbjct: 342 IGLGVMGFADMLLYMGIPYNSDQGVAMAREVMELVNTIGHEESQALA 388
>UniRef50_Q9YA77 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Desulfurococcales|Rep: Ribonucleoside-diphosphate
reductase - Aeropyrum pernix
Length = 979
Score = 56.4 bits (130), Expect = 6e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL S++++ +V + ++ ++ + +TE ++ +ID+N +P +N R IG+
Sbjct: 478 CNLGSLSVDKYVAGGR-FDLERFANDVEFLTEAMDAVIDLNRHPDERQDTANKFTRKIGL 536
Query: 441 GVQGLADAFILMRLPYESPEAI 506
G+ GLADA + PY+S EA+
Sbjct: 537 GIMGLADALAGLGYPYDSEEAV 558
Score = 34.3 bits (75), Expect = 2.9
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 88 AQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEIVEY 237
A+ +W+ I+EA G P +++ D+ N+ S LG + +N C+E Y
Sbjct: 424 AREIWREIVEAAWGGGDPGLVYFDNHNKWSPTPWLGAVNATNPCSEQTLY 473
>UniRef50_P09853 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=9; Simplexvirus|Rep: Ribonucleoside-diphosphate
reductase large chain - Human herpesvirus 2 (strain 333)
(HHV-2) (Human herpes simplex virus2)
Length = 1144
Score = 56.4 bits (130), Expect = 6e-07
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
LAD G+EFE LYE E F + Q L AI+ + TG+P+++FKD+ NR
Sbjct: 730 LADFHGEEFEKLYEHLEAMG-FGETIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYD 788
Query: 187 NLG-TIKCSNLCTEIVEYTS 243
G I SNLCTEIV +S
Sbjct: 789 TQGAAIAGSNLCTEIVHPSS 808
Score = 52.0 bits (119), Expect = 1e-05
Identities = 32/109 (29%), Positives = 54/109 (49%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
S VCNL S+ L V +T++F L++ + +N +ID P P+ + + R
Sbjct: 812 SGVCNLGSVNLARCVS-RRTFDFGMLRDAVQACVLMVNIMIDSTLQPTPQCARGHDNLRS 870
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
+GIG+QGL A + M L ES E + ++ + A++ S L +
Sbjct: 871 MGIGMQGLHTACLKMGLDLESAEFRDLNTHIAEVMLLAAMKTSNALCVR 919
>UniRef50_A7KUZ9 Cluster: Nrd alpha subunit; n=1; Bacillus phage
0305phi8-36|Rep: Nrd alpha subunit - Bacillus phage
0305phi8-36
Length = 767
Score = 56.0 bits (129), Expect = 8e-07
Identities = 36/105 (34%), Positives = 54/105 (51%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
VCNLAS+ L V L V + +T L+ IID+N V +A +N R+RPIG
Sbjct: 495 VCNLASVNLAKAVPAGV------LARVIRIVTRMLDNIIDINTISVLQAGITNKRYRPIG 548
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+G G ++ L +ES A+N + + F +++S ELA
Sbjct: 549 MGAYGWHHLLAILGLDWESEAAVNYADTLYEEFAYHVIDSSVELA 593
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Frame = +1
Query: 85 RAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNL-----GTIKCSNLCTEIVE 234
RA + I+E Q+ETG PYM ++D NR + K++ I CSNLCTEI +
Sbjct: 412 RAMDIMVRIMEIQLETGMPYMFYRDQVNRMNPNKHVHGIGRTAIYCSNLCTEIAQ 466
>UniRef50_A7HK53 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; n=1; Fervidobacterium
nodosum Rt17-B1|Rep: Ribonucleoside-diphosphate
reductase, adenosylcobalamin-dependent -
Fervidobacterium nodosum Rt17-B1
Length = 841
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/80 (33%), Positives = 45/80 (56%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI + F + + Y ++ + T+ L+ +IDVN +P+ + +K+ R IG+
Sbjct: 339 CNLGSIDVAKFYMNGEFY-WEAFAQATRLAVRFLDDVIDVNVFPLEKIRKAVTDSRRIGL 397
Query: 441 GVQGLADAFILMRLPYESPE 500
G+ G AD +M +PY S E
Sbjct: 398 GIMGFADLLYMMDIPYNSHE 417
>UniRef50_Q9RZL7 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Deinococcus|Rep: Ribonucleoside-diphosphate reductase -
Deinococcus radiodurans
Length = 702
Score = 55.2 bits (127), Expect = 1e-06
Identities = 29/75 (38%), Positives = 47/75 (62%)
Frame = +1
Query: 19 WGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGT 198
W KE+++L + + +V A+ L + I Q E+G PY+LF+ + NR + N+GT
Sbjct: 319 WTKEYQALADNPNIRKK---RVSARRLLEDIAVTQGESGYPYLLFEGNANRANPIPNVGT 375
Query: 199 IKCSNLCTEIVEYTS 243
IK SNLC+EI++ T+
Sbjct: 376 IKMSNLCSEILQPTT 390
Score = 39.9 bits (89), Expect = 0.058
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKII-DVNYYPVPEAKKSNLRHRPIG 437
CNLAS+ + +T + L V L+ + + + VP K++N R IG
Sbjct: 411 CNLASLVIE------QTMHGGDLGRVVGAAIRMLDNVARSTSVHEVPAVKRANDEMRSIG 464
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+G GL L Y SPEA+ ++ + A +AS E+A
Sbjct: 465 LGAMGLHSFLAGKELIYGSPEALEFVDVFFAAVHYHARKASMEIA 509
>UniRef50_Q21U31 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Rhodoferax ferrireducens T118|Rep:
Ribonucleoside-diphosphate reductase - Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Length = 589
Score = 55.2 bits (127), Expect = 1e-06
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +3
Query: 261 CNLASIALNMFVDD----NKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
CNL SI L+ FV + + + L+ V T L+ + D++ +P+ +KS L R
Sbjct: 306 CNLGSINLSRFVQQPFAAHPSVDLGGLRAVAAVATRFLDDVYDISLFPLKAQQKSALASR 365
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV GLAD ++ L Y S +I+ + + A S ELA
Sbjct: 366 RIGLGVTGLADMLAMLGLRYGSAASIDLTREIMGAIRDTAYRTSVELA 413
Score = 33.5 bits (73), Expect = 5.0
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 79 QVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
+V A+ LW+ +++AQ +G P +LF D NR +N
Sbjct: 249 RVPARALWEKLLQAQHASGEPGVLFIDRINRANN 282
>UniRef50_A7IYE5 Cluster: Putivate ribonucleotide reductase; n=1;
Corynebacterium phage P1201|Rep: Putivate ribonucleotide
reductase - Corynebacterium phage P1201
Length = 865
Score = 55.2 bits (127), Expect = 1e-06
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 40 LYETYEKENRFVXQ-VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNL 216
+Y+T+ K++R + A+ L++ I E Q E+G PY++F D+ NR + N+G IK SNL
Sbjct: 320 MYDTWLKDDRIAKTFIDARKLFQTIAEVQFESGYPYLMFDDAANRGNPAPNIGRIKSSNL 379
Query: 217 C 219
C
Sbjct: 380 C 380
>UniRef50_Q89YE5 Cluster: Ribonucleoside-diphosphate reductase;
n=49; root|Rep: Ribonucleoside-diphosphate reductase -
Bradyrhizobium japonicum
Length = 723
Score = 54.8 bits (126), Expect = 2e-06
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = +1
Query: 58 KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNR--KSNQKNLG-TIKCSNLCTEI 228
K N V ++ A+ LW+ I+E +++TG PY+LF D+ NR +Q+ LG + SNLC+EI
Sbjct: 345 KTNEVVREIDARQLWQRILENRLQTGEPYLLFIDTVNRALPKHQRELGLEVSTSNLCSEI 404
Query: 229 VEYTSDD 249
T D
Sbjct: 405 TLSTGID 411
>UniRef50_Q2LW62 Cluster: Ribonucleoside-diphosphate reductase alpha
chain; n=1; Syntrophus aciditrophicus SB|Rep:
Ribonucleoside-diphosphate reductase alpha chain -
Syntrophus aciditrophicus (strain SB)
Length = 551
Score = 54.0 bits (124), Expect = 3e-06
Identities = 33/106 (31%), Positives = 57/106 (53%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
C L SI L+ V N ++++L+++T L+ +++V+ YP E + +R IG+
Sbjct: 285 CCLGSINLSRIVR-NGGIDWQRLQKLTHLGVRFLDDVVEVSTYPSEEIRAMTSGNRKIGL 343
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
GV G A I + +PY+SP+A + ++L + AS LA K
Sbjct: 344 GVMGFAHLLIRLGIPYDSPDAERTGGEIIRLIERESKIASNRLAEK 389
Score = 34.3 bits (75), Expect = 2.9
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 79 QVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
+V A+ L + I EA +G P ++F D+ NR + ++G I+ +N C E
Sbjct: 228 KVNARELLRFIAEAAWASGEPGVIFLDAINRANPTPHVGEIEATNPCGE 276
>UniRef50_Q18BC3 Cluster: Putative ribonucleotide-diphosphate
reductase; n=2; Clostridium difficile|Rep: Putative
ribonucleotide-diphosphate reductase - Clostridium
difficile (strain 630)
Length = 729
Score = 53.6 bits (123), Expect = 4e-06
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Frame = +3
Query: 261 CNLASIALNMFV----DDNKTYNFKKLKEVTKTITENLNKIID--VNYYPVPEAKKSNLR 422
C L SI L+ F+ ++ T++ KLK + LN ++D +N +P+ E + S +
Sbjct: 364 CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVALNDVLDEGLNLHPLQEQRDSVHK 423
Query: 423 HRPIGIGVQGLADAFILMRLPYESPEAI 506
+R IG+GV G+AD I M + Y S E++
Sbjct: 424 YRQIGLGVMGIADMLIKMGIRYGSDESL 451
>UniRef50_Q01037 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=12; Herpesviridae|Rep:
Ribonucleoside-diphosphate reductase large chain -
Saimiriine herpesvirus 2 (strain 11) (SaHV-2)
(Herpesvirus saimiri)
Length = 767
Score = 53.6 bits (123), Expect = 4e-06
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
P L +G EFE Y E ++ V + L ++I ++TG+PY++ K++ N+
Sbjct: 321 PNLTRLYGLEFEEEYLRLVSEKKYKQSVTLKSLMFSLINTIIKTGSPYVISKEAMNKHHW 380
Query: 181 QKNLG-TIKCSNLCTEIVE 234
+ G I CSNLC EIV+
Sbjct: 381 YETQGEAINCSNLCAEIVQ 399
>UniRef50_A3EPA5 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Leptospirillum sp. Group II UBA|Rep:
Ribonucleoside-diphosphate reductase - Leptospirillum
sp. Group II UBA
Length = 732
Score = 53.2 bits (122), Expect = 6e-06
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKT----YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
CNL SI L V + T ++++L L+ ++D N +P+PE N R
Sbjct: 285 CNLGSINLERHVRSSATGKPEVDWERLGRSVYLAVRFLDNVVDANRFPIPELAAVNQGTR 344
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+G+ G A + + +PY+S E + K + A S +LA
Sbjct: 345 RIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDLA 392
>UniRef50_A2PYM5 Cluster: Ribonucleoside-diphosphate reductase alpha
subunit; n=4; Cyanophage Ma|Rep:
Ribonucleoside-diphosphate reductase alpha subunit -
Cyanophage Ma-LMM02
Length = 742
Score = 53.2 bits (122), Expect = 6e-06
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Frame = +1
Query: 7 LADCWGKEFESLY---ETYEKENR----FVXQVRAQVLWKAIIEAQVETGTPYMLFKDSC 165
LAD +G EF + Y E Y + V +V A+ +WK ++ +ETGTPY+ FKD
Sbjct: 365 LADMYGDEFTNAYHVIEAYINSSAPPLDVVKKVSAKAIWKKMLMLLLETGTPYVAFKDRI 424
Query: 166 NRKSNQKNLGTIKCSNLCTE 225
N + K+ G I NLC E
Sbjct: 425 NALNPNKHEGIIGGVNLCVE 444
Score = 50.0 bits (114), Expect = 5e-05
Identities = 35/107 (32%), Positives = 51/107 (47%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
S C L S+ L DD ++ +V++T L+ D+ P PEA+ R+R
Sbjct: 454 SHCCMLLSLVLPRIADD-------EMADVSRTAVRLLDAACDLTTSPTPEARAHVNRYRT 506
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+GV GLAD + L Y+ +N I K + +AS ELA
Sbjct: 507 IGVGVMGLADWLAIRHLRYQD---LNLIEKLFEDICFYTTQASVELA 550
>UniRef50_O36411 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Alcelaphine herpesvirus 1|Rep:
Ribonucleoside-diphosphate reductase - Alcelaphine
herpesvirus 1 (wildebeest herpesvirus)
Length = 780
Score = 52.8 bits (121), Expect = 8e-06
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
LA+ +G EF S YE + + + L II ++TG+PY+++K++CN + + K
Sbjct: 324 LANLYGDEFRSEYERLVGIGCYADAIPIKSLMFLIINTIIKTGSPYIIYKEACN-EHHWK 382
Query: 187 NLG--TIKCSNLCTEIVEYTSDD 249
N+ I +NLC E+++Y D
Sbjct: 383 NMEGCAIASANLCAEVIQYPGAD 405
>UniRef50_A3W1N9 Cluster: Ribonucleoside-diphosphate reductase; n=8;
Bacteria|Rep: Ribonucleoside-diphosphate reductase -
Roseovarius sp. 217
Length = 1131
Score = 52.8 bits (121), Expect = 8e-06
Identities = 33/121 (27%), Positives = 56/121 (46%)
Frame = +3
Query: 264 NLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIG 443
NLA + F + + L ++ + ++ ++DV+ +P+P R IG+G
Sbjct: 655 NLARLVTEPFATGARV-DAAALDDLVRVAVRMMDNVVDVSGFPLPAQAAEAQAKRRIGLG 713
Query: 444 VQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAPASR 623
V GLADA +++ L Y S EA+ +L A AS +LA + + DA +
Sbjct: 714 VTGLADALLMVGLRYGSDEAVQQTEAWLHAIARAAYLASVDLAREKGAFPLFDRDAYLAS 773
Query: 624 G 626
G
Sbjct: 774 G 774
Score = 34.3 bits (75), Expect = 2.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 67 RFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEIVEYTSD 246
R V+A+ LW I++A + P ++F D N +N TI +N C +
Sbjct: 216 RVYHTVQARDLWNRIMQATYDYAEPGVIFIDRINAANNLSYCETIAATNPCVTAETWVMT 275
Query: 247 DE 252
DE
Sbjct: 276 DE 277
>UniRef50_A0MN59 Cluster: Ribonucleotide reductase alpha subunit;
n=1; Thermus phage phiYS40|Rep: Ribonucleotide reductase
alpha subunit - Thermus phage phiYS40
Length = 797
Score = 52.8 bits (121), Expect = 8e-06
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Frame = +3
Query: 261 CNLASIALNMFVDD--------NKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSN 416
CNL SI L+ FV + + ++F KL EV++ + L+ + D+ P+ + K++
Sbjct: 452 CNLGSIFLHRFVKEPFNYDLKPEENFDFDKLFEVSRLMNRFLDFVNDITNLPLVQLKEAA 511
Query: 417 LRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
R G+G+ G+AD I++ L Y S EA + K + + + + +A
Sbjct: 512 FTKRRHGLGISGIADTLIMVGLRYGSEEAAKFLEKIMYTIQLASAVENVRMA 563
>UniRef50_P50643 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=18; Herpesviridae|Rep:
Ribonucleoside-diphosphate reductase large chain -
Pseudorabies virus (strain Kaplan) (PRV)
Length = 835
Score = 52.8 bits (121), Expect = 8e-06
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQK 186
LA G +F YE E+ V + Q + I+ + V TG+P+++ KD+CNR +
Sbjct: 420 LASLHGPDFAREYERLERLGLGVESLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTD 479
Query: 187 NLG-TIKCSNLCTEIVEYTSDDE 252
G + SNLCTEIV+ + E
Sbjct: 480 TRGAALATSNLCTEIVQRATPGE 502
Score = 43.6 bits (98), Expect = 0.005
Identities = 27/109 (24%), Positives = 49/109 (44%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+ VCNLAS+ L + ++F L+ + +N ++ + YP + + R R
Sbjct: 503 NGVCNLASVNLPACLAGG-AFDFAALRRAARVAAVFVNAMMRIGNYPTGASVEGVRRSRS 561
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
+GIG+QGL + + + P A + G ++AS EL +
Sbjct: 562 LGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASVELCER 610
>UniRef50_Q7NEB4 Cluster: Gll3966 protein; n=1; Gloeobacter
violaceus|Rep: Gll3966 protein - Gloeobacter violaceus
Length = 1566
Score = 52.4 bits (120), Expect = 1e-05
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKT---YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLR 422
++ CNL SI ++ F+ + +++ L + T L+ ++DV + P A+K N+R
Sbjct: 1131 NSACNLGSIVISKFMHRTERGVELDWEDLARTVEISTRFLDNVLDVAEFATP-AQKHNVR 1189
Query: 423 H--RPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMI 596
+ R +G+G+ G AD R+PY+S + I+K + A S LAA+ C I
Sbjct: 1190 NVFRQLGLGIMGWADWLKARRIPYDSEAHLREIDKVGRFIAERAYRTSEALAAEKGACGI 1249
>UniRef50_A3I5A9 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Bacillus sp. B14905|Rep: Ribonucleoside-diphosphate
reductase - Bacillus sp. B14905
Length = 697
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 34 ESLYETYEKEN-RFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCS 210
E YE + R + ++ A+ L+ + +AQ E+G P+ +F D+ N KN+G +K S
Sbjct: 317 EMYYELLDNPKIRKIKRLNARRLYTEVKKAQFESGYPFEIFDDNVNEVHPLKNIGRVKMS 376
Query: 211 NLCTEIVE 234
NLCTEI++
Sbjct: 377 NLCTEILQ 384
Score = 38.7 bits (86), Expect = 0.13
Identities = 26/122 (21%), Positives = 59/122 (48%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL SI ++ +K +F+ L + + N++++ + VP K+N +G+
Sbjct: 406 CNLGSIDIHAA---SKVNDFETLIDTAMHLLTNVSQMTYIKN--VPSVAKANRLMHSVGL 460
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAPAS 620
G L + + Y S ++I+ ++++++ +L++S E+A + E D+ +
Sbjct: 461 GCMNLHGHLVTEGIMYGSKDSIDFMDRFMEAMNYYSLKSSMEMAKEKAETFYRFEDSDYA 520
Query: 621 RG 626
G
Sbjct: 521 SG 522
>UniRef50_Q7UI46 Cluster: Vitamin B12-dependent ribonucleotide
reductase; n=3; Bacteria|Rep: Vitamin B12-dependent
ribonucleotide reductase - Rhodopirellula baltica
Length = 1040
Score = 51.6 bits (118), Expect = 2e-05
Identities = 30/107 (28%), Positives = 49/107 (45%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNLASI L FV + +++ ++ + +T ++D YP +++ + RP+G+
Sbjct: 433 CNLASINLMKFVQQDGSFDHERFRAACRTFFIAQEILVDHASYPTEPIARNSHKFRPLGL 492
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKV 581
G L + LPY+S A L A S ELA+ V
Sbjct: 493 GYSNLGSVIMTAGLPYDSDAARGMCGSLTALLHGEANRTSAELASVV 539
>UniRef50_A4IY36 Cluster: Ribonucleoside-diphosphate reductase,
alpha chain; n=18; root|Rep: Ribonucleoside-diphosphate
reductase, alpha chain - Francisella tularensis subsp.
tularensis (strain WY96-3418)
Length = 590
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNR--KSNQKNLG-TIKCSNLCTEI 228
++A+ +W+ I+E + TG PY+ F D+ NR +QK+LG TIK SNLC EI
Sbjct: 229 IKARKIWETILETRYRTGEPYLNFIDTANRALPKSQKDLGLTIKGSNLCNEI 280
Score = 39.5 bits (88), Expect = 0.076
Identities = 32/112 (28%), Positives = 53/112 (47%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
+AVC L+S+ L + D+ K + +K++ + + L ID + +A+ S R R
Sbjct: 289 TAVCCLSSVNLERY-DEWKDTSL--IKDLIRFLDNVLQFFIDHAGDEISKARYSASRERS 345
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWE 587
+G+G G L R+P+ES A + K ALE + L A+ E
Sbjct: 346 LGLGAMGFHSYLQLHRVPFESQRAKEINEEIFKRIKEQALEETLILGAEKGE 397
>UniRef50_Q1FPU1 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Clostridium|Rep: Ribonucleoside-diphosphate reductase -
Clostridium phytofermentans ISDg
Length = 764
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEIVEYTSDDEVQ 258
V A + K I+++ VETG P++ F+D+ N+ + K+ G I SNLC EI + S+ E++
Sbjct: 413 VPALEVMKRIMKSAVETGAPFIFFRDTVNQANPNKHAGMIYSSNLCQEITQNMSESELR 471
>UniRef50_Q8Y2Y6 Cluster: Ribonucleoside-diphosphate reductase;
n=12; Burkholderiaceae|Rep: Ribonucleoside-diphosphate
reductase - Ralstonia solanacearum (Pseudomonas
solanacearum)
Length = 617
Score = 50.4 bits (115), Expect = 4e-05
Identities = 30/90 (33%), Positives = 45/90 (50%)
Frame = +3
Query: 360 LNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFT 539
L+ ID+ +P+ E + R IG+GV GLADA +M LPY++PEA N + +
Sbjct: 355 LDNAIDITRWPLIEHMREAHAKRRIGVGVTGLADALTMMGLPYQAPEARNLAVQIGRCLR 414
Query: 540 MGALEASCELAAKVWECMIHTTDAPASRGH 629
A AS LA + + + + GH
Sbjct: 415 DNAYAASAALAQERSPYPLFRAERSLAPGH 444
Score = 34.7 bits (76), Expect = 2.2
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
V A+ LW ++EA + P +LF D+ N ++ L TI +N C E
Sbjct: 260 VPARQLWDMLVEAAHHSAEPGLLFIDTINAANDLAELETIAATNPCGE 307
>UniRef50_A1HDY4 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Ralstonia pickettii 12J|Rep: Ribonucleoside-diphosphate
reductase - Ralstonia pickettii 12J
Length = 596
Score = 50.4 bits (115), Expect = 4e-05
Identities = 30/108 (27%), Positives = 50/108 (46%)
Frame = +3
Query: 312 YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYE 491
++F L + L+ I++ +P+PE R IG+GV GLADA +M LPY+
Sbjct: 327 FDFVGLSRAVRVQVRMLDNAIEITRWPLPEHMHEAQAKRRIGVGVTGLADALTMMCLPYD 386
Query: 492 SPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAPASRGHIT 635
+P A + + A AS LA + + + + + GH +
Sbjct: 387 APAARCFAAQIGRCLRDSAYAASAALACERGPYPLFSPERSLAPGHFS 434
Score = 33.5 bits (73), Expect = 5.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
V A+ LW I EA + P +LF D+ N ++ + TI +N C E
Sbjct: 248 VPARQLWNMIAEAAHHSAEPGLLFIDTINAANDLAEIETIAATNPCGE 295
>UniRef50_Q3B5C1 Cluster: Ribonucleotide reductase family protein;
n=3; Chlorobium/Pelodictyon group|Rep: Ribonucleotide
reductase family protein - Pelodictyon luteolum (strain
DSM 273) (Chlorobium luteolum (strain DSM273))
Length = 1521
Score = 50.0 bits (114), Expect = 5e-05
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTY-NFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
+ CNLAS+ L FVD+ + +L+ T L + + ++P P+ + + +R
Sbjct: 832 NTACNLASLNLIHFVDEESGHVKINELRHAAALWTVVLEISVLMAHFPSPDIARLSYEYR 891
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+G+G L +++ +PY+SP+A+ + T A S E++
Sbjct: 892 TLGLGFANLGTVLMVLGIPYDSPKALALAGAISAIITGQAYVTSAEIS 939
>UniRef50_Q3SMN2 Cluster: Ribonucleoside-diphosphate reductase alpha
chain; n=1; Thiobacillus denitrificans ATCC 25259|Rep:
Ribonucleoside-diphosphate reductase alpha chain -
Thiobacillus denitrificans (strain ATCC 25259)
Length = 600
Score = 49.6 bits (113), Expect = 7e-05
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Frame = +3
Query: 261 CNLASIALNMFV----DDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVP-EAKKSNLRH 425
C+L S+ L FV + + L + L+ +IDV+ YP+ +A+++ +
Sbjct: 301 CDLGSLNLTAFVVAPFAADARLDLAALGDAAALAVRFLDDVIDVSRYPLQAQAREARFKR 360
Query: 426 RPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
R IG+G+ GLADA +L+ L Y+S A + ++ A AS +LA
Sbjct: 361 R-IGLGITGLADALVLLGLDYDSEPARQLAERAMRTVRDAAYRASIDLA 408
Score = 41.9 bits (94), Expect = 0.014
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 67 RFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEI 228
R + VRA+ LW+ I+ A +T P +LF D+ NR + T+ +N C EI
Sbjct: 240 RVLRTVRARALWQRILRAAYDTAEPGVLFVDTINRDNTLAGRETLTTTNPCGEI 293
>UniRef50_Q1J1T0 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Deinococcus geothermalis DSM 11300|Rep:
Ribonucleoside-diphosphate reductase - Deinococcus
geothermalis (strain DSM 11300)
Length = 1010
Score = 49.6 bits (113), Expect = 7e-05
Identities = 25/78 (32%), Positives = 45/78 (57%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
C+L +I L +V N ++F + +T L+ ++DVN + + + + ++ R +G+
Sbjct: 481 CDLGAINLAAYVQ-NSRFDFAAFRADVRTCVRFLDDVLDVNVFALEDNRVASQDLRRLGL 539
Query: 441 GVQGLADAFILMRLPYES 494
GV GLADA I + L Y+S
Sbjct: 540 GVMGLADALIKLGLRYDS 557
Score = 35.9 bits (79), Expect = 0.94
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLG---TIKCSNLCTEI 228
V A+ LW I E TG P ++F D N S KNLG I+ +N C EI
Sbjct: 422 VPAKWLWDQIAEHAWATGEPGLIFVDRVNEHSALKNLGKRYEIRSTNPCGEI 473
>UniRef50_Q120H3 Cluster: Ribonucleotide reductase large subunit;
n=1; Polaromonas sp. JS666|Rep: Ribonucleotide reductase
large subunit - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 784
Score = 49.6 bits (113), Expect = 7e-05
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKT----YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
C L S L FV + T ++F L +V E L+K++D ++P+P+ R
Sbjct: 334 CCLGSPNLTRFVSNPFTLMASFDFDGLSKVVAKAVEMLDKVLDKTHWPLPQQASEAANKR 393
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
IG+G GLADA ++ + Y+S + + ++ A AS LA
Sbjct: 394 RIGLGHFGLADAMAMLGIRYDSQQGADFAAHVSEVLRDSAYMASVNLA 441
>UniRef50_Q0LX20 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Alphaproteobacteria|Rep: Ribonucleoside-diphosphate
reductase - Caulobacter sp. K31
Length = 782
Score = 49.2 bits (112), Expect = 9e-05
Identities = 31/105 (29%), Positives = 50/105 (47%)
Frame = +3
Query: 264 NLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIG 443
NLA + N F D + +L + +T L+ +ID++ +P+ R +GIG
Sbjct: 323 NLARLVDNPFEAD-AALDEDRLGALARTAVRMLDNVIDISRFPLEAQAVEARAKRRLGIG 381
Query: 444 VQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
V GLADA + Y +A+ ++L + A AS LAA+
Sbjct: 382 VTGLADALVFCGARYGDDQAVALTQRWLGVIKREAYRASARLAAE 426
>UniRef50_O55716 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Invertebrate iridescent virus 6|Rep:
Ribonucleoside-diphosphate reductase - Chilo iridescent
virus (CIV) (Insect iridescent virus type 6)
Length = 959
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 22 GKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRK--SNQKNLG 195
G + + + + + V A+ LW+ I+E +++TG PY+ F D+CN+ QK G
Sbjct: 204 GGNIDDTWNLIDPHTKKITTVGARDLWQRILETRMKTGEPYICFIDTCNKHMYDFQKKKG 263
Query: 196 -TIKCSNLC 219
TIK SNLC
Sbjct: 264 LTIKQSNLC 272
>UniRef50_Q6MNP6 Cluster: Vitamin B12-dependent ribonucleotide
reductase; n=1; Bdellovibrio bacteriovorus|Rep: Vitamin
B12-dependent ribonucleotide reductase - Bdellovibrio
bacteriovorus
Length = 764
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
+ CNLASI L F++D ++F+ +T+ ++D + YP +++ +RP+
Sbjct: 387 SACNLASINLVKFLNDTGDFDFESFIHTARTLFVAQEILVDYSSYPTQRVAQNSHDYRPL 446
Query: 435 GIGVQGLADAFILMRLPYESPE 500
G+G L + + Y+S E
Sbjct: 447 GLGFANLGSLLMRKGVAYDSDE 468
>UniRef50_Q88YQ4 Cluster: Ribonucleoside-diphosphate reductase,
alpha chain; n=57; Lactobacillales|Rep:
Ribonucleoside-diphosphate reductase, alpha chain -
Lactobacillus plantarum
Length = 721
Score = 48.0 bits (109), Expect = 2e-04
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Frame = +3
Query: 261 CNLASIAL-NMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
CNL S + N+ + ++ + + +T++ N +DV VP +K N + IG
Sbjct: 409 CNLGSTNIVNLMTSPDFGHSVEAMVRALTFVTDHSN--VDV----VPSIQKGNRQAHTIG 462
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAPA 617
+G GL F ++ Y S EA++ N Y L L+AS E+A + E ++ +
Sbjct: 463 LGAMGLHAFFAKNQMEYGSKEAVDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKY 522
Query: 618 SRGHITVRHVELKIQPGFMGTGTCF 692
+ G ++ QP + T F
Sbjct: 523 ADGSYFDKYTTQDWQPKYDKTAALF 547
Score = 36.7 bits (81), Expect = 0.54
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Frame = +1
Query: 79 QVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEIVEYTS----D 246
+++A+ L I + Q E+G PY++ D+ NR++ G I SNLC+E+++ + D
Sbjct: 338 KIKARDLENEISKLQQESGYPYVVNIDTANRENPID--GKIVMSNLCSEVMQVQTPSLID 395
Query: 247 DEVQY 261
D+ QY
Sbjct: 396 DQQQY 400
>UniRef50_A5JBG3 Cluster: Ribonucleotide reductase, large subunit;
n=11; Burkholderia|Rep: Ribonucleotide reductase, large
subunit - Burkholderia mallei FMH
Length = 677
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/89 (31%), Positives = 42/89 (47%)
Frame = +3
Query: 312 YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYE 491
++F + L+ +DV +P+ + + + R IG+GV GLAD +MRL Y+
Sbjct: 407 FDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYD 466
Query: 492 SPEAIN*INKYLKLFTMGALEASCELAAK 578
SP A A AS ELAA+
Sbjct: 467 SPAAREMARYIASDLRHHAYAASAELAAE 495
>UniRef50_UPI00004BA6C5 Cluster: UPI00004BA6C5 related cluster; n=1;
unknown|Rep: UPI00004BA6C5 UniRef100 entry - unknown
Length = 969
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1
Query: 55 EKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLC 219
E EN ++ A+ + I + Q+++G PY+++KD+ N+ LG IK SNLC
Sbjct: 324 ENENVIKHKINAREMLNLIAQIQLQSGYPYIMYKDNANKNHALNELGEIKMSNLC 378
Score = 38.7 bits (86), Expect = 0.13
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYP-VPEAKKSNLRHRPI 434
+CNLAS LNM K+ K+++E +T L + + + +P K+N +R +
Sbjct: 788 ICNLAS--LNMV----KSIEEKEIEESIRTGMRALTFVANNSRIEHLPTVHKANKNNRAV 841
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAK 578
G+GV ++ Y S E+++ +N Y + +L+ S ++A +
Sbjct: 842 GLGVMSFHSMCAKNKIRYGSEESLDLLNVYCMMMDYYSLDESMKIAVE 889
>UniRef50_Q196Z5 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Aedes taeniorhynchus iridescent virus|Rep:
Ribonucleoside-diphosphate reductase - Aedes
taeniorhynchus iridescent virus
Length = 630
Score = 47.6 bits (108), Expect = 3e-04
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNR--KSNQKNLG-TIKCSNLCTEIVEYTSD 246
++A LW+ II + ETG PY+ + D+ NR QKNLG +I+ SNLC+E+V T +
Sbjct: 271 IKATELWERIILTRAETGEPYIHWIDTSNRALPQFQKNLGLSIRQSNLCSEVVLPTDE 328
>UniRef50_A4WLF4 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; n=1; Pyrobaculum arsenaticum
DSM 13514|Rep: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent - Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321)
Length = 1240
Score = 47.6 bits (108), Expect = 3e-04
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Frame = +3
Query: 258 VCNLASIALNMFVDDN----------KTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAK 407
VCNL I L FV DN ++ L + + T L+ ID + +
Sbjct: 842 VCNLTHINLVKFVKDNCGGGSFEEKLGCIDWDGLAQAARVGTRFLDDAIDRSKTGIEVID 901
Query: 408 KSNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+ N R G+G+ G A+ I + +PY S EA+ IN+ + + AL+ S ELA
Sbjct: 902 EMNAATRKNGLGIMGFAELLIKLGVPYASWEAVELINRIMGWIYVNALDESAELA 956
>UniRef50_Q9RRW1 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Deinococcus radiodurans|Rep: Ribonucleoside-diphosphate
reductase - Deinococcus radiodurans
Length = 1418
Score = 46.4 bits (105), Expect = 7e-04
Identities = 24/78 (30%), Positives = 45/78 (57%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
C+L +I L +V + ++F + +T L+ ++DVN + + + + ++ R +G+
Sbjct: 902 CDLGAINLAAYVRGSD-FDFAAFRADVRTCVRFLDDVLDVNVFALEDNRVASQDLRRLGL 960
Query: 441 GVQGLADAFILMRLPYES 494
GV GLADA I M L Y++
Sbjct: 961 GVMGLADALIKMGLRYDN 978
>UniRef50_Q604J6 Cluster: Ribonucleoside-diphosphate reductase; n=3;
Proteobacteria|Rep: Ribonucleoside-diphosphate reductase
- Methylococcus capsulatus
Length = 1317
Score = 46.0 bits (104), Expect = 9e-04
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKT----YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
C L S+ L FV T + ++L EV L+ ++D Y+P+ ++ R
Sbjct: 674 CCLGSLDLTRFVSRPFTPEAAFEAERLAEVATIAVRMLDNVLDTTYWPLARQRQEAQAKR 733
Query: 429 PIGIGVQGLADAFILMRLPYESPEA 503
IG+G GL DA ++ L Y+S A
Sbjct: 734 RIGLGFTGLGDALAMLGLRYDSAAA 758
>UniRef50_Q8ZTP7 Cluster: Ribonucleoside-diphosphate reductase; n=3;
Pyrobaculum|Rep: Ribonucleoside-diphosphate reductase -
Pyrobaculum aerophilum
Length = 849
Score = 45.2 bits (102), Expect = 0.002
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKT----------YNFKKLKEVTKTITENLNKIIDVNYYPVPEAK 407
VCNL I L FV +N +++ L + + T L+ I+ + +
Sbjct: 451 VCNLTHINLVKFVKENCAGGSFEEKLGCIDWEGLAQAARVGTRYLDDAIERSRTGIKIID 510
Query: 408 KSNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+ N R G+G+ G A+ I + +PY S EA+ IN+ + + AL+ S ELA
Sbjct: 511 EMNSATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDESAELA 565
>UniRef50_P78027 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=36; Firmicutes|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Mycoplasma pneumoniae
Length = 721
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +1
Query: 34 ESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSN 213
E YE + + A+ ++ + E E+G PY+LF D+ NR++ N I SN
Sbjct: 327 EMYYELLANQRIKKTFINARKFFQTVAELHFESGYPYILFDDTVNRRNAHPN--RIVMSN 384
Query: 214 LCTEIVEYTSDDEVQY 261
LC+EIV+ ++ E +
Sbjct: 385 LCSEIVQPSTPSEFHH 400
Score = 42.3 bits (95), Expect = 0.011
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDV-NYYPVPEAKKSNLRHRPIG 437
CNL S+ + ++ ++ E+ K E+L+ + V N P +K N + +G
Sbjct: 413 CNLGSLNIAKAMESGPEFS-----ELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALG 467
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+G L ++ Y SPEAI+ N + A +AS ELA
Sbjct: 468 LGAMNLHGFLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELA 512
>UniRef50_A7CVZ3 Cluster: Ribonucleoside-diphosphate reductase
precursor; n=1; Opitutaceae bacterium TAV2|Rep:
Ribonucleoside-diphosphate reductase precursor -
Opitutaceae bacterium TAV2
Length = 613
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEK---ENRFVX-QVRAQVLWKAIIEAQVETGTPYMLFKDSCN 168
P L + +G++FE Y YE E + ++ A LWK ++ ETG ++ FKD+CN
Sbjct: 544 PDLHELYGRKFEDAYLRYETLAAEGKIHGHRIAALDLWKKMLSMLFETGHTWLTFKDACN 603
Query: 169 RKSNQKNLG 195
+S Q + G
Sbjct: 604 IRSPQDHAG 612
>UniRef50_A1W357 Cluster: Ribonucleoside-diphosphate reductase;
n=16; Burkholderiales|Rep: Ribonucleoside-diphosphate
reductase - Acidovorax sp. (strain JS42)
Length = 811
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Frame = +3
Query: 261 CNLASIALNMFVDD------NKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLR 422
C+L I L FV + +++F ++ T L+ ++DV ++P+P+ + +
Sbjct: 308 CDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLDVTFWPLPQQQAESAA 367
Query: 423 HRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
R IG+G G+ + ++ Y+ E + + + A AS ELA
Sbjct: 368 KRRIGVGFTGMGNTLAMLCKRYDRQEGRDMAVQIAERMRNAAYRASVELA 417
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
VRA+ LW I+++ + P +LF D N +N TI+ +N C E
Sbjct: 252 VRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNPCGE 299
>UniRef50_A1TJY2 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; n=3; Comamonadaceae|Rep:
Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent - Acidovorax avenae subsp.
citrulli (strain AAC00-1)
Length = 1226
Score = 44.4 bits (100), Expect = 0.003
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Frame = +3
Query: 261 CNLASIALNMFVDD------NKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLR 422
C+L I L FV ++F T L+ ++DV ++P+P+ + +
Sbjct: 701 CDLGPIILPRFVRHPFGFAGEPAFDFDAFAASVATQVRALDNVLDVTFWPLPQQRAESAA 760
Query: 423 HRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
R IG+G GL + ++RL Y++ + + A AS ELA
Sbjct: 761 KRRIGVGFTGLGNTLAMLRLRYDTDAGRAMAMRIAECMRDAAYAASVELA 810
>UniRef50_P0A5W9 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=110; Bacteria|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Mycobacterium bovis
Length = 725
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/70 (32%), Positives = 43/70 (61%)
Frame = +1
Query: 34 ESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSN 213
E YE + +++A+ ++ + E Q E+G PY++F+D+ NR +N + G I SN
Sbjct: 340 EKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVNR-ANPID-GKITHSN 397
Query: 214 LCTEIVEYTS 243
LC+EI++ ++
Sbjct: 398 LCSEILQVST 407
>UniRef50_Q2S5T5 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; n=1; Salinibacter ruber DSM
13855|Rep: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent - Salinibacter ruber (strain
DSM 13855)
Length = 894
Score = 44.0 bits (99), Expect = 0.004
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 258 VCNLASIALNMFVD-DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
VC L ++ + VD + T ++ + ++ L+ + D++Y P+ E +++ R I
Sbjct: 373 VCLLGNLNVTQLVDREAGTIDYDLVDDLVPLAVRFLDNVNDLSYVPLEEQQRNLQEKRRI 432
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
G+G G A ++M+ Y S E + ++ + A +AS LA
Sbjct: 433 GLGHYGDGSALMMMKTRYGSEEGARVMREFQEHLANQAYQASARLA 478
>UniRef50_P03190 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=5; Lymphocryptovirus|Rep:
Ribonucleoside-diphosphate reductase large chain -
Epstein-Barr virus (strain B95-8) (HHV-4) (Human
herpesvirus 4)
Length = 826
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 19 WGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLG- 195
+G+EFE Y +F +V + L +I+ V+ G+P++L K++CN + G
Sbjct: 322 YGEEFEREYYRLVTAGKFCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGE 381
Query: 196 TIKCSNLCTEIVE 234
+ +NLC E+++
Sbjct: 382 AMNAANLCAEVLQ 394
>UniRef50_Q9HPG8 Cluster: Ribonucleoside-diphosphate reductase; n=5;
root|Rep: Ribonucleoside-diphosphate reductase -
Halobacterium salinarium (Halobacterium halobium)
Length = 1051
Score = 42.3 bits (95), Expect = 0.011
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +3
Query: 351 TENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLK 530
T L ++ ++ +PVPE ++ R IG+GV GLA +I + + Y S E ++ ++
Sbjct: 499 TRFLENVVTMSDFPVPEIEQKVSEMRKIGLGVMGLAQLYIQLGVKYGSEEGNEIASQLMQ 558
Query: 531 LFTMGALEASCELA 572
+ AS ELA
Sbjct: 559 TINHDSKTASHELA 572
>UniRef50_Q5DN91 Cluster: Ribonucleotide reductase; n=1; Phage
phiJL001|Rep: Ribonucleotide reductase - Phage phiJL001
Length = 602
Score = 41.9 bits (94), Expect = 0.014
Identities = 24/92 (26%), Positives = 44/92 (47%)
Frame = +3
Query: 297 DDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILM 476
D T+++ + ++ ++D YP+ E +K R +G+GV LA+A +
Sbjct: 319 DSRWTFDWDLFATDVYAVVRAMDNVVDRAIYPLFEQEKEAKSKRRMGLGVTALANAAEAL 378
Query: 477 RLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+PY S E + + L+ + +AS ELA
Sbjct: 379 GMPYGSIEFLKFEGQVLETLACNSYQASVELA 410
Score = 34.7 bits (76), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
+ A+ LW+ I+ + + P LF D NR +N K TI +N C E
Sbjct: 239 INAENLWEMIMRSTWDWAEPGTLFIDQINRMNNLKYCETIAATNPCGE 286
>UniRef50_Q2NME4 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=2; unclassified Iridovirus|Rep:
Ribonucleoside-diphosphate reductase large chain -
Costelytra zealandica iridescent virus (CzIV) (Insect
iridescent virustype 16)
Length = 378
Score = 41.5 bits (93), Expect = 0.019
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +1
Query: 10 ADCWGKEFESLYETYEKENRFVXQ-VRAQVLWKAIIEAQVETGTPYMLFKDSCNRK--SN 180
A + KE + ++ + N+ V + + A LW+ I+ + E G PY F D+ NRK
Sbjct: 90 AQTYIKEMDK-FDLTDPHNKEVKETISATELWERILVTRAECGEPYCHFIDTSNRKLPEF 148
Query: 181 QKNLG-TIKCSNLC 219
QK LG IK SNLC
Sbjct: 149 QKKLGLNIKQSNLC 162
>UniRef50_P50620 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=53; Bacteria|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Bacillus subtilis
Length = 700
Score = 41.5 bits (93), Expect = 0.019
Identities = 31/137 (22%), Positives = 64/137 (46%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGI 440
CNL S+ + + V ++K+ K +K T ++T ++++ D+ P +++N + IG+
Sbjct: 409 CNLGSLNI-LNVMEHKSIE-KTVKLATDSLT-HVSETTDIRN--APAVRRANKAMKSIGL 463
Query: 441 GVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAPAS 620
G L + YESPEA + N + + +++ S E+A + E + +
Sbjct: 464 GAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGETFDQYEGSTYA 523
Query: 621 RGHITVRHVELKIQPGF 671
G ++V P +
Sbjct: 524 TGEYFDKYVSTDFSPKY 540
Score = 39.5 bits (88), Expect = 0.076
Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 28 EFESLYETYEKENRFVXQ-VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIK 204
+ +Y+ + R + + + L + + + E+G PY++F+D+ N+ ++ +K
Sbjct: 318 DMNEMYDKFVDNPRVKKEKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVK 377
Query: 205 CSNLCTEIVE 234
SNLC+E+++
Sbjct: 378 FSNLCSEVLQ 387
>UniRef50_O41962 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Murid herpesvirus 4|Rep: Ribonucleoside-diphosphate
reductase - Murid herpesvirus 4 (MuHV-4) (Murine
gammaherpesvirus 68)
Length = 783
Score = 41.1 bits (92), Expect = 0.025
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 7 LADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKS--- 177
L + +G F Y ++ + V + + A++ ++TG PY+L K + NR
Sbjct: 326 LTNTYGYMFSIAYAGLVEQGAYEAVVPIKSVMFALVSCIIKTGGPYILNKKAINRHDWHE 385
Query: 178 -NQKNLGTIKCSNLCTEIVEYTSDD 249
+ I C+NLC E+++Y ++
Sbjct: 386 WSTHQYRAINCANLCAEVIQYPGEN 410
Score = 41.1 bits (92), Expect = 0.025
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNK---------TY----NFKKLKEVTKTITENLNKIIDVNYYPV 395
+ CNLA+I L ++D+K TY + ++L+ T+ +N I P
Sbjct: 412 STCNLANICLPKCLEDDKFVSGKSCLLTYEREFSIERLERATEAAVFIINACIHGGTLPT 471
Query: 396 PEAKKSNLRHRPIGIGVQGLADAFILMRLPY 488
A++ R +GIGVQGLAD F +M L Y
Sbjct: 472 QRARRGQ-SDRSMGIGVQGLADTFAMMGLGY 501
>UniRef50_A5FCJ4 Cluster: Ribonucleoside-diphosphate reductase,
alpha chain; n=2; cellular organisms|Rep:
Ribonucleoside-diphosphate reductase, alpha chain -
Flavobacterium johnsoniae UW101
Length = 565
Score = 40.7 bits (91), Expect = 0.033
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Frame = +1
Query: 97 LWKAIIEAQVETGTPYMLFKDSCNRKSNQ----KNLGTIKCSNLCTEIVEYTSDDE 252
+W ++E++ + G PY+ F D+ N+ Q +NL I SNLC+EI+ ++ DE
Sbjct: 223 IWAKVLESRQQKGLPYIFFSDNVNKNKPQVYKDQNL-RINASNLCSEIMLPSTHDE 277
Score = 37.1 bits (82), Expect = 0.41
Identities = 30/107 (28%), Positives = 48/107 (44%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
S +C L+S+ L ++ + T K + + + + NYY + A K RHR
Sbjct: 278 SFICCLSSMNLELYEEWKDTEAVKLAIFFLDAVLQEFIEKTEGNYY-LSAANKFAKRHRA 336
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
+G+GV G +P+E EA + K + A +AS ELA
Sbjct: 337 LGLGVLGWHSYLQKNMIPFEGMEAKMKTTEIFKHISDKADKASQELA 383
>UniRef50_Q5A0N2 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 135
Score = 40.7 bits (91), Expect = 0.033
Identities = 28/77 (36%), Positives = 37/77 (48%)
Frame = +2
Query: 29 NLNPYMKHMKKKIDLXNK*GHKFFGKQ**KLK*RLVLHTCYLKIHVIEKVIRKI*VP*NV 208
N Y + KKK + K G + K + V H CY+KIHV ++ V N+
Sbjct: 22 NSKNYTPNTKKKTVVDRPSKLKNCGMLFWEPKSKQVPHLCYIKIHVTTNPTKRTWVLSNL 81
Query: 209 VTCALK*LNIHLMMKCS 259
TC +K LNI L MK S
Sbjct: 82 PTCVVKLLNISLQMKLS 98
>UniRef50_O41114 Cluster: A632L protein; n=1; Paramecium bursaria
Chlorella virus 1|Rep: A632L protein - Paramecium
bursaria Chlorella virus 1 (PBCV-1)
Length = 72
Score = 40.3 bits (90), Expect = 0.044
Identities = 25/57 (43%), Positives = 28/57 (49%)
Frame = -2
Query: 251 SSSDVYSTISVHRLLHFMVPKXXXXXXXLHESLNNMYGVPVST*ASIIAFQRTCALT 81
SS DVYS IS+H+LL MVP SL YG PVS I F + A T
Sbjct: 7 SSFDVYSRISIHKLLPRMVPALDCIFFLFTVSLLATYGCPVSMMVVTIVFHTSRAFT 63
>UniRef50_Q897Z5 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Clostridium|Rep: Ribonucleoside-diphosphate reductase -
Clostridium tetani
Length = 1047
Score = 40.3 bits (90), Expect = 0.044
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +3
Query: 261 CNLASIALNMFVDDN-KTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
CNLASI + F D K + + V + L I +P + + R G
Sbjct: 422 CNLASINIYKFYDGKEKNIDLESYLHVVGLVQLALEASIYWGQFPTKDIAQKTYMFRATG 481
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFT 539
+G+ LA +++ PY S EA N + + L T
Sbjct: 482 LGITNLASLLMVLGYPYNSTEARNISSALVGLLT 515
>UniRef50_A0LDD1 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; n=24; Proteobacteria|Rep:
Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent - Magnetococcus sp. (strain
MC-1)
Length = 707
Score = 40.3 bits (90), Expect = 0.044
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Frame = +3
Query: 261 CNLASIALNMFVDDNKT----YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
C L S+ L FV + T +++ + KEV T L+ +++++ P+P R
Sbjct: 329 CLLGSVNLARFVKNPFTAKAEFDWARFKEVVAVFTRMLDNVVEIHGLPLPGQADEIAHKR 388
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
G+G GL ++ + Y +++ ++ + + E ELA
Sbjct: 389 RHGMGFLGLGSTLTMLNMVYGDRQSVEFTSQVAREMALTGWEVGLELA 436
>UniRef50_P37426 Cluster: Ribonucleoside-diphosphate reductase 1
subunit alpha; n=194; root|Rep:
Ribonucleoside-diphosphate reductase 1 subunit alpha -
Salmonella typhimurium
Length = 761
Score = 40.3 bits (90), Expect = 0.044
Identities = 32/112 (28%), Positives = 50/112 (44%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
A+C L++ L KT + +L+E+ L+ ++D YP+P AK+ + R +
Sbjct: 460 ALCTLSAFNLGAI----KTLD--ELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTL 513
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWEC 590
GIGV A Y A N +K + L+AS ELA + C
Sbjct: 514 GIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGAC 565
>UniRef50_Q8SCB8 Cluster: Large subunit ribonucleotide reductase;
n=7; unclassified Myoviridae|Rep: Large subunit
ribonucleotide reductase - Staphylococcus phage Twort
Length = 705
Score = 39.9 bits (89), Expect = 0.058
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 109 IIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEIVE 234
I Q+E+G PY+ + D+ N K LG ++ SNLC E+ +
Sbjct: 347 IARTQLESGYPYVFYIDNANDNHPLKKLGKVQMSNLCCEVTQ 388
Score = 35.9 bits (79), Expect = 0.94
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Frame = +3
Query: 258 VCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYP-VPEAKKSNLRHRPI 434
VC L S+ L V+ LKE + +L+K+ D+ P +P +K+N R I
Sbjct: 411 VCTLGSLNLVNVVEKGL------LKESVDSGIRSLSKVTDLMNVPFLPSVQKANDELRAI 464
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAP 614
G+G L Y S E+++ N ++++S ELA + + ++
Sbjct: 465 GLGAMNWHGLLAKNMLSYGSRESLDIANSLFSAIRYYSIKSSMELAKETGKVFKGFKESE 524
Query: 615 ASRGHITVRHVELKIQP 665
G + +++ +P
Sbjct: 525 YYTGEVFSSYIQKSHEP 541
>UniRef50_Q66LW9 Cluster: Ribonucleoside-diphosphate reductase 1
alpha chain; n=3; Enterobacteria phage T5|Rep:
Ribonucleoside-diphosphate reductase 1 alpha chain -
Bacteriophage T5
Length = 811
Score = 39.9 bits (89), Expect = 0.058
Identities = 30/128 (23%), Positives = 58/128 (45%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
++CNL + L + + + ++ + + ++ II++ YP P + + + R +
Sbjct: 514 SLCNLGGVVLG------RMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKRRNV 567
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAP 614
GIG+ A A L YE EA N I++ + + +AS LA + C P
Sbjct: 568 GIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFNRTKP 627
Query: 615 ASRGHITV 638
S+G + +
Sbjct: 628 -SKGILVI 634
>UniRef50_Q6YRG1 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Candidatus Phytoplasma|Rep: Ribonucleoside-diphosphate
reductase - Onion yellows phytoplasma
Length = 769
Score = 39.1 bits (87), Expect = 0.10
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +1
Query: 82 VRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEIVEYT 240
+ + L + I Q E+G PY++F D+ N ++N +L +K SNLCTEI++ T
Sbjct: 409 INPRQLLELIAHMQGESGYPYLMFCDNTN-QANTSDL-KVKFSNLCTEILQPT 459
>UniRef50_Q1ISM3 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Bacteria|Rep: Ribonucleoside-diphosphate reductase -
Acidobacteria bacterium (strain Ellin345)
Length = 1004
Score = 39.1 bits (87), Expect = 0.10
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
+ CNLAS+ L F N T++ + ++D YP K++ +RP+
Sbjct: 410 SACNLASLNLMKFAP-NGTFDVAAYRHACAITITAQEILVDNAGYPTESIMKNSHDYRPL 468
Query: 435 GIGVQGLADAFILMRLPYES 494
G+G L + LPY+S
Sbjct: 469 GLGYANLGALLMAAGLPYDS 488
Score = 32.7 bits (71), Expect = 8.8
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 58 KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
K V +A+ L I EA + G P M + + NR KN I SN C+E
Sbjct: 348 KSGDVVKTFKARWLLSKISEATWQCGDPGMQYDTTVNRWHTSKNTARINASNPCSE 403
>UniRef50_Q0W4L0 Cluster: Putative uncharacterized protein; n=2;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 269
Score = 38.7 bits (86), Expect = 0.13
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -3
Query: 370 ILFKFSVIVLVTSFNFLKL-YVL-LSSTNIFSAIEAKLHTALHHQMYIQLFQCTGYYILW 197
I F VL FN L L +VL LSST F ++ + TAL QM C + IL+
Sbjct: 131 IYFNDPTEVLPVIFNILPLMFVLSLSSTMFFYSLTLLICTALKDQMLSFFTSCLSWIILF 190
Query: 196 YLN----FSDYFFYYMN 158
YL F+ Y YY+N
Sbjct: 191 YLINDDWFAGYISYYLN 207
>UniRef50_O55567 Cluster: P25; n=1; Leucania separata nuclear
polyhedrosis virus|Rep: P25 - Leucania separata nuclear
polyhedrosis virus (LsNPV)
Length = 222
Score = 38.3 bits (85), Expect = 0.18
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVET 132
P L D +G +FE Y+ YE + +F Q+ A L + IIE Q ET
Sbjct: 158 PKLNDTYGDDFEYWYKHYEDKGQFREQMPAVTLMRNIIEIQAET 201
>UniRef50_A7HCF4 Cluster: Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent; n=3; Cystobacterineae|Rep:
Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent - Anaeromyxobacter sp.
Fw109-5
Length = 929
Score = 37.9 bits (84), Expect = 0.23
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
+ CNLAS+ L F + ++ + K ++ YP + K++ +RP+
Sbjct: 377 SACNLASLNLMHFRGIDGAFDVESFKRAVDLTVLAQEILVSNAKYPTEQIGKNSEDYRPL 436
Query: 435 GIGVQGLADAFILMRLPYES 494
G+G L + LPY+S
Sbjct: 437 GLGYANLGALLMASGLPYDS 456
>UniRef50_UPI000155442E Cluster: hypothetical protein ORF046; n=1;
Pseudomonas phage M6|Rep: hypothetical protein ORF046 -
Pseudomonas phage M6
Length = 620
Score = 37.1 bits (82), Expect = 0.41
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +3
Query: 312 YNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYE 491
+++ + +E + ++ ++D YP+P+ K+ R +G+G+ GLA+A + Y
Sbjct: 335 FDWDQYREDIPQVVRAMDNVVDRAIYPLPQQKQEAKDKRRMGLGITGLANAAEALGHEYG 394
Query: 492 SP 497
SP
Sbjct: 395 SP 396
Score = 34.7 bits (76), Expect = 2.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 79 QVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTE 225
+V A+ LW AI+ + P +LF D+ NR +N TI +N C E
Sbjct: 257 EVDARALWDAIMRGTWDWAEPGVLFIDAINRMNNLWYCETIAATNPCGE 305
>UniRef50_A3XHF8 Cluster: Ribonucleoside-diphosphate reductase,
alpha subunit 1; n=10; root|Rep:
Ribonucleoside-diphosphate reductase, alpha subunit 1 -
Leeuwenhoekiella blandensis MED217
Length = 600
Score = 36.7 bits (81), Expect = 0.54
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 97 LWKAIIEAQVETGTPYMLFKDSCN--RKSNQKNLG-TIKCSNLCTEIVEYTSDD 249
+W +++ + E G PY+ + D+ N + K+ G I SNLCTEI+ +SD+
Sbjct: 247 VWAKVLQRRGEMGYPYIFYTDNANNGKPDVYKDKGHDIYASNLCTEIMLPSSDE 300
>UniRef50_Q6LQZ0 Cluster: Putative uncharacterized protein; n=2;
Photobacterium profundum|Rep: Putative uncharacterized
protein - Photobacterium profundum (Photobacterium sp.
(strain SS9))
Length = 173
Score = 35.9 bits (79), Expect = 0.94
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 28 EFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKC 207
+F++LYE E V + + KA + AQ GTPY LF +C + Q + ++C
Sbjct: 42 QFDTLYEFSEGRAILVSSITSDEPEKAYLYAQQYLGTPYNLFNRNCEQFVRQSHGLPVEC 101
Query: 208 S 210
+
Sbjct: 102 T 102
>UniRef50_Q7TDH5 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Haloviruses|Rep: Ribonucleoside-diphosphate reductase -
Halovirus HF1
Length = 805
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 315 NFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYES 494
+F +L + T L+ ++ + +P+PE + R IG+G+ G A M +PY +
Sbjct: 433 DFNELDRTIEAGTRFLDNVVTQSDFPIPEITERVGGMRKIGLGIMGFAQMLYQMGVPYGT 492
Query: 495 PEA 503
++
Sbjct: 493 QDS 495
>UniRef50_Q18GD3 Cluster: Ribonucleoside-diphosphate reductase alpha
subunit; n=1; Haloquadratum walsbyi DSM 16790|Rep:
Ribonucleoside-diphosphate reductase alpha subunit -
Haloquadratum walsbyi (strain DSM 16790)
Length = 1909
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 351 TENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEA 503
T L ++ ++ +PV E + + R IG+G+ GLA +I + + Y S EA
Sbjct: 910 TRFLENVVTMSDFPVDEIEATVRDMRKIGLGIMGLAQLYIQIGVRYGSQEA 960
>UniRef50_O31875 Cluster: Ribonucleoside-diphosphate reductase; n=13;
root|Rep: Ribonucleoside-diphosphate reductase - Bacillus
subtilis
Length = 1084
Score = 34.7 bits (76), Expect = 2.2
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 261 CNLASIAL-NMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
CNL S+ + N+ + + + + T+T N I++ P ++N R IG
Sbjct: 793 CNLGSMNIVNVMSNQSIASTVRIAIDSLTTVTRKTN-IVNA-----PAVARANTLMRSIG 846
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWE 587
+G L + YES EA + N Y + +L+ S E+A + E
Sbjct: 847 LGQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGE 896
Score = 33.9 bits (74), Expect = 3.8
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 88 AQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLC 219
A+ L + + + E+G PY++F D+ N+ +++ +K SNLC
Sbjct: 338 ARKLLEQLAILRSESGYPYIMFADNVNKVHPNEHISKVKFSNLC 381
>UniRef50_Q5CHN1 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium hominis|Rep: Putative uncharacterized
protein - Cryptosporidium hominis
Length = 76
Score = 33.9 bits (74), Expect = 3.8
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -2
Query: 470 NKSISKTLNTYSNRSMSKIRFFCFR-NRVIIYINDFIQIFCYSFSNFF*FLKVI 312
+K + K Y + ++SK +F + N + I+IN F + +S SNFF FL ++
Sbjct: 23 SKILKKNNRRYLS-NISKKKFVLIKQNNITIHINKFFFLLFFSLSNFFLFLNIV 75
>UniRef50_O69981 Cluster: Vitamin B12-dependent ribonucleotide
reductase; n=12; Actinomycetales|Rep: Vitamin
B12-dependent ribonucleotide reductase - Streptomyces
coelicolor
Length = 967
Score = 33.9 bits (74), Expect = 3.8
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Frame = +3
Query: 261 CNLASIALNMFVDD----NKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHR 428
CNLAS+ L F+ D N++++ ++ +V + + ++ I +P + ++ R
Sbjct: 377 CNLASLNLMKFLKDDGKGNQSFDAERFSKVVELVITAMDISICFADFPTQKIGENTRAFR 436
Query: 429 PIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKV 581
+GIG L + Y+S L T + S ELAA V
Sbjct: 437 QLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAIV 487
>UniRef50_Q89MB9 Cluster: Vitamin B12-dependent ribonucleotide
reductase; n=82; root|Rep: Vitamin B12-dependent
ribonucleotide reductase - Bradyrhizobium japonicum
Length = 1254
Score = 33.9 bits (74), Expect = 3.8
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = +3
Query: 261 CNLASIALNMFVD-DNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIG 437
CNLAS L F + K ++ + + + + T L + + +P + + R +G
Sbjct: 487 CNLASANLLTFYNVATKHFDVEGYEHLCRLWTVVLEISVMMAQFPSKAIAELSYEFRTLG 546
Query: 438 IGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKV 581
+G + + M LPY+S E + T + S E+AA++
Sbjct: 547 LGYANIGGLLMTMGLPYDSKEGRALCGALTAVMTGITYKTSAEIAAEL 594
>UniRef50_Q7RJL4 Cluster: Putative uncharacterized protein PY03245;
n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY03245 - Plasmodium yoelii yoelii
Length = 409
Score = 33.5 bits (73), Expect = 5.0
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +3
Query: 291 FVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFI 470
F++DNK Y + K+ E++ + + NLNK Y + L + I + + + +I
Sbjct: 139 FIEDNKDYLYNKIGEISNSFSTNLNK------YTTCMHELYGLYNESIDVSMDNFRNGYI 192
Query: 471 LMRLPYESPE 500
M++ + E
Sbjct: 193 FMQIHFSKHE 202
>UniRef50_A2FWX8 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 3852
Score = 33.5 bits (73), Expect = 5.0
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVN 383
SA I LNM + D+ F+K + + KTI+ENL KII+++
Sbjct: 1860 SATLKYPEIPLNMILMDSNYNGFEK-EMIKKTISENLPKIIEIS 1902
>UniRef50_Q7REC9 Cluster: Putative uncharacterized protein PY05136;
n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY05136 - Plasmodium yoelii yoelii
Length = 368
Score = 33.1 bits (72), Expect = 6.6
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSN 416
S LAS + F D+N + +K++E K ++E++ II P+PEA+ N
Sbjct: 309 SVATTLASSFADTFKDENGKPDKRKMQEQGKLMSEHMQHIIKEVSKPLPEAQTKN 363
>UniRef50_A0DYW6 Cluster: Chromosome undetermined scaffold_7, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_7,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 782
Score = 33.1 bits (72), Expect = 6.6
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 264 NLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKK 410
N S L +F+ ++YN + +++ K IT N+ I+D N PV + ++
Sbjct: 129 NCLSYFLLLFLFKKQSYNLNQAQDIIKQITSNIYVILDNNLNPVYDEER 177
>UniRef50_UPI00006CE942 Cluster: hypothetical repeat containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical repeat containing protein - Tetrahymena
thermophila SB210
Length = 2307
Score = 32.7 bits (71), Expect = 8.8
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDV--NYYPVPEAKK 410
S C+ ASI + +F+ DN +YN+ +K + K I E L + ID Y P E K+
Sbjct: 2068 STNCSAASILIGVFIYDN-SYNY-LIKGIKKIIIEKLAEKIDYFKKYLPKEEQKR 2120
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,219,844
Number of Sequences: 1657284
Number of extensions: 11156924
Number of successful extensions: 32211
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 30431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32039
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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