Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0266
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 139 3e-34
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 29 0.84
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 28 1.5
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 2.6
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 27 2.6
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 4.5
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 4.5
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 26 5.9
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.9
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 7.9
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 7.9
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 139 bits (337), Expect = 3e-34
Identities = 71/124 (57%), Positives = 89/124 (71%)
Frame = +3
Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
AVCNLAS+AL F+ D K YNF+KL +V K +T NLNKIIDVNYYPVPEA++SN+RHRP+
Sbjct: 442 AVCNLASVALPTFIKDGK-YNFQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPV 500
Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELAAKVWECMIHTTDAP 614
G+GVQGLADAF +RLP+ES A + + ALEASCE+ A+V +P
Sbjct: 501 GLGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEASCEI-AQVEGTYESYEGSP 559
Query: 615 ASRG 626
AS+G
Sbjct: 560 ASQG 563
Score = 138 bits (334), Expect = 7e-34
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGLAD WG EF +LYE YEKENR + AQ +W AI+++QVETG P+ML+KDSCNRKSN
Sbjct: 357 PGLADVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSN 416
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDEV 255
QKN+GTI+CSNLCTEIVEY+S DEV
Sbjct: 417 QKNVGTIRCSNLCTEIVEYSSPDEV 441
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 622 EGILQYDMWN 651
+GILQYDMWN
Sbjct: 562 QGILQYDMWN 571
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 28.7 bits (61), Expect = 0.84
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 294 VDDNKTYNFKKLKEVTKTITENLNKIID---VNYYPVPEAKKSNLRHRPIGIGVQGLADA 464
+ D+ F+KLK+ +T+ ENL + V+ Y + + + H + +G+ LA +
Sbjct: 719 IQDDVFKTFEKLKDTFETVLENLPYFTNSETVDLYNLLSFCSAFILHSQVSMGLVNLASS 778
Query: 465 FI 470
F+
Sbjct: 779 FL 780
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 367 LFKFSVIVLVTSFNFLKLYVLLSSTNIFSAIEAKLHTALHHQMYIQLFQ 221
LF F ++ TSF ++ LLSS I S ++ + H+ Y+ Q
Sbjct: 54 LFLFPWTIITTSFVDANVFTLLSSILILSVYGVEIERSWGHKEYLLFCQ 102
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +1
Query: 43 YETYEKENRFVXQVRAQVLWKAIIEAQVE----TGTPYMLFKDSCNRKSNQKNLGTIKCS 210
Y YE E + + + +IEA + T + F+DS R+ ++K+ KC
Sbjct: 751 YGNYELETKLIEMHDRVEMQTNVIEASASALDVSNTAILSFEDSLRRERDEKSTLQQKCL 810
Query: 211 NL 216
NL
Sbjct: 811 NL 812
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 348 ITENLNK-IIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYES 494
+ +N+N I+D Y EA +S+ R + IG+ +A++ Y S
Sbjct: 546 LEKNVNLLIVDTQPYSTREAVRSSSRKKDIGLYAMNFGNAYVASTALYSS 595
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 309 TYNFKKLKEVTKTITENLNKIIDVNY 386
TYN ++++ + + E LNK DVN+
Sbjct: 1504 TYNLEEVEYLVNMVDELLNKFPDVNF 1529
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 282 LNMFVDDNKTYNFKKLKEVTKTITENLNKIIDV 380
LN +++ K YN + ++IT L K+ID+
Sbjct: 515 LNYYIECCKNYNGGVMDNDEESITNKLKKVIDI 547
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 300 DNKTYNFKKLKEVTKTITENLN--KIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAF 467
++ T +FKK + + KT+ ++ ++D + P E+ K ++ + ++GL +AF
Sbjct: 124 ESMTSDFKKFQSLLKTLETDIEGLNLVDHTHDPSDESIKQTVQR--LRSSIEGLDEAF 179
>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 331 FNFLKLYVLLSSTNIFSAIEAKLHTALHHQMYIQLFQCT 215
+NF L+ +LS T +F E LH + Q+ ++ + CT
Sbjct: 4 YNFRYLHNVLSHTVVFCFTEVSLH--IVKQLGVESYACT 40
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 327 LKEVTKTITENLNKIIDVNYYPVPEAKK 410
++ V + + +LN IIDV+ + VPE K
Sbjct: 688 VENVPRMLPSHLNAIIDVDTWEVPEVFK 715
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 432 IGIGVQGLADAFILMRLPYESPEAIN 509
+G G L A L RLPYE E IN
Sbjct: 268 LGRGANSLDYASALTRLPYEKGEFIN 293
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 157 DSCNRKSNQKNLGT-IKCSNLCTEIVEYTSDDEVQYAT 267
+SC R S Q+ + K SN C + +S++ V YA+
Sbjct: 2 ESCTRSSLQQLVAADSKSSNFCFRNLSQSSNNNVSYAS 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,293
Number of Sequences: 5004
Number of extensions: 52187
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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