Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0266
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474... 134 6e-32
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 118 4e-27
08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006... 29 3.5
01_06_0702 + 31324790-31325030,31325130-31325254,31325395-313256... 29 4.6
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 28 8.1
08_02_1109 + 24364464-24364710,24366572-24366638,24366639-243667... 28 8.1
>02_05_1133 +
34346894-34347121,34347222-34347283,34347373-34347460,
34348005-34348268,34348346-34348586,34348672-34348748,
34348837-34349007,34349084-34349176,34349257-34349406,
34349491-34349577,34349656-34349820,34349900-34350019,
34350244-34350446,34350547-34350696,34350779-34350926,
34351046-34351129,34351207-34351308
Length = 810
Score = 134 bits (324), Expect = 6e-32
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
PGLADCWG EF++LY+ YE+E + V AQ LW I++AQ+ETGTPYML+KDSCNRKSN
Sbjct: 357 PGLADCWGDEFQNLYKKYEREGKAKKVVSAQALWFDILKAQIETGTPYMLYKDSCNRKSN 416
Query: 181 QKNLGTIKCSNLCTEIVEYTSDDE 252
Q+NLGTIK SNLCTEI+E+TS E
Sbjct: 417 QQNLGTIKSSNLCTEIIEFTSPTE 440
Score = 112 bits (269), Expect = 3e-25
Identities = 66/144 (45%), Positives = 86/144 (59%), Gaps = 19/144 (13%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDD-------------------NKTYNFKKLKEVTKTITENLNKII 374
+AVCNLASI L FV + N+ ++F KL E+T +T NLNKII
Sbjct: 441 TAVCNLASIGLPRFVREKGVPMESHPAKLVGSNGSKNRYFDFDKLAEITSIVTRNLNKII 500
Query: 375 DVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALE 554
D NYYPV AK+SN+RHRPIGIGVQGLAD FIL+ +P++S EA + AL+
Sbjct: 501 DTNYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALK 560
Query: 555 ASCELAAKVWECMIHTTDAPASRG 626
AS E+AAK + + +P S+G
Sbjct: 561 ASAEIAAKEGPYETY-SGSPVSKG 583
>06_01_0485 -
3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 118 bits (284), Expect = 4e-27
Identities = 66/128 (51%), Positives = 82/128 (64%), Gaps = 19/128 (14%)
Frame = +3
Query: 252 SAVCNLASIALNMFVDD-------------------NKTYNFKKLKEVTKTITENLNKII 374
+AVCNLASIAL FV + N+ ++F KL EVT T+T NLNKII
Sbjct: 488 TAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKII 547
Query: 375 DVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALE 554
D+NYYPV AK+SN+RHRPIGIGVQGLAD FIL+ +P++SPEA + +L+
Sbjct: 548 DINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLK 607
Query: 555 ASCELAAK 578
AS ELA K
Sbjct: 608 ASAELAGK 615
Score = 118 bits (283), Expect = 6e-27
Identities = 60/100 (60%), Positives = 69/100 (69%), Gaps = 16/100 (16%)
Frame = +1
Query: 1 PGLADCWGKEFESLYETYEKENRFVXQ----------------VRAQVLWKAIIEAQVET 132
PGLADCWG EFE LY YE+E V + V AQ LW I++AQ+ET
Sbjct: 388 PGLADCWGDEFEKLYTKYEREFIEVGKDYNNIALYFQGKAKKIVPAQTLWFDILKAQIET 447
Query: 133 GTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEIVEYTSDDE 252
GTPYML+KD+CNRKSNQ+NLGTIK SNLCTEI+EYTS E
Sbjct: 448 GTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTE 487
>08_02_0306 -
15599409-15599657,15600326-15600475,15600574-15600663,
15600776-15601126,15601389-15601430,15601523-15601600
Length = 319
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 277 IEAKLHTALHHQMYIQLFQC 218
++ KLH L H YI++FQC
Sbjct: 134 LDGKLHLVLSHLRYIKIFQC 153
>01_06_0702 +
31324790-31325030,31325130-31325254,31325395-31325640,
31325745-31326000,31326102-31326325
Length = 363
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 367 LFKFSVIVLVTSFNFLKLYVLLSSTNIFSAIEAKLHTALHHQMYIQLFQCTG 212
+F V+VLV FN L L + N + E+ + T + H + + C G
Sbjct: 249 MFNRRVVVLVNQFNRLLPGALFTYINCYGIFESIMRTPVEHGLAVTNRGCCG 300
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 315 NFKKLKEVTKTITENLNKIIDVNYYPVPEAKK 410
++KK K++ + +++ KI+ +NYY P AK+
Sbjct: 897 SWKKYKDIDEALSQ-ARKIVGINYYLEPAAKE 927
>08_02_1109 +
24364464-24364710,24366572-24366638,24366639-24366746,
24367200-24367332,24368096-24368167,24368754-24368886,
24369310-24369470
Length = 306
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 358 FSVIVLVTSFNFLKLYVLLSSTN---IFSAIEAKLHTALHHQMYIQLFQCTGYYILWYLN 188
F +++V N + +++ + ++ + A +T + Y ++FQCT + +Y+
Sbjct: 140 FRNLIIVEKANLKECHIMQTRSSFARVLGGQNANQNTPAENAFYAEMFQCTSDDLQFYMA 199
Query: 187 FS 182
FS
Sbjct: 200 FS 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,945
Number of Sequences: 37544
Number of extensions: 280378
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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