Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0266
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)            141   4e-34
SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)                 29   2.7  
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_31876| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.2  
SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)                 28   6.2  
SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)                 28   6.2  
SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2)                     28   8.3  
SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)             28   8.3  

>SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)
          Length = 783

 Score =  141 bits (342), Expect = 4e-34
 Identities = 59/85 (69%), Positives = 74/85 (87%)
 Frame = +1

Query: 1   PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
           PGL DC+G++FE LYE YE + +++ Q++AQ LW AI+E+Q ETGTPYML+KD+CN KSN
Sbjct: 374 PGLQDCYGEKFEKLYEKYESQGKYMRQIKAQKLWFAILESQTETGTPYMLYKDACNSKSN 433

Query: 181 QKNLGTIKCSNLCTEIVEYTSDDEV 255
           QKNLGTIKCSNLCTEIVEY++ DEV
Sbjct: 434 QKNLGTIKCSNLCTEIVEYSAPDEV 458



 Score =  110 bits (264), Expect = 1e-24
 Identities = 54/79 (68%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
 Frame = +3

Query: 342 KTITENLNKIIDVNYYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESPEAIN*INK 521
           + +T+NLNKIIDVNYYPVPEA+KSN RHRPIGIGVQGLADAFILMR P+ES +A   +NK
Sbjct: 457 EVVTKNLNKIIDVNYYPVPEARKSNFRHRPIGIGVQGLADAFILMRYPFESQKAQE-LNK 515

Query: 522 YL-KLFTMGALEASCELAA 575
            + +    GA+ ASC+LAA
Sbjct: 516 LIFETIYYGAVTASCDLAA 534


>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 318 FKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
           FKK++++  ++   L K+++ +Y  +PEAK   L+ R +
Sbjct: 95  FKKVEKIDDSVQLMLLKVLNHDYNDIPEAKIKELKKRKL 133


>SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
          Length = 556

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 339 TKTITENLNKIIDVNYYP--VPEAKKSNLRHRPIGIGVQGLA 458
           T    +  N  I++  Y   VPE KK   RH+P+   VQG A
Sbjct: 483 TLRFLQYFNSCINIQVYAWRVPEFKKVLFRHKPVVANVQGRA 524


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 384 YYPVPEAKKSNLRHRPIGIGVQGLADAFILMRLPYESP 497
           YYPVP ++   + H P  I ++G A+   +  +PY  P
Sbjct: 507 YYPVPVSRPGQIHHIPYPIYIRGPAE---VRHVPYPVP 541


>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 58   KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNL 216
            K N+ V   +++     I E++ ++G  +    ++CNRKS  +++  I   N+
Sbjct: 1974 KVNKLVKSSKSKYYCDMIEESKGDSGKIWKAVNEACNRKSTSESIQCIITDNI 2026


>SB_31876| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 630

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 58  KENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNL 216
           K N+ V   +++     I E++ ++G  +    ++CNRKS  +++  I   N+
Sbjct: 103 KVNKLVKSSKSKYYCDMIEESKGDSGKIWKAVNEACNRKSTSESIQCIITDNI 155


>SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
          Length = 256

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 339 TKTITENLNKIIDVNYYP--VPEAKKSNLRHRPIGIGVQGLA 458
           T    +  N  I++  Y   VPE KK   RH+P+   VQG A
Sbjct: 177 TLRFLQYFNSCINIVVYAWRVPEFKKVLFRHKPVVANVQGRA 218


>SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           K+    TKT+ E + ++ID  Y+ + +A+K  L   P
Sbjct: 350 KREPHYTKTVDEVVTQLIDAKYFTLIDARKRVLARSP 386


>SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)
          Length = 334

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 309 TYNFKKLKEVTKTITENLNKIIDVNYYP--VPEAKKSNLRHRPIGIGVQGLA 458
           +YN+    E+T    +  N  I++  Y   +PE K+   RH+P+   VQG A
Sbjct: 247 SYNY--YTEMTLRYLQYSNSCINIVVYAWRIPEFKQVLFRHKPVVANVQGRA 296


>SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2)
          Length = 344

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 282 LNMFVDDNKTYNFKK--LKEVTKTITENLNKIIDVNYYP 392
           LN+F D+  TYN  K  L  +TK   EN+  ++ V Y P
Sbjct: 256 LNLFSDEGGTYNSGKQQLTSITKPFRENIAALV-VFYTP 293


>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
          Length = 425

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 109 IIEAQVETGTPYMLFKDSCNRKSNQKNLGTIKCSNLCTEIVEYTSDDE 252
           + EAQ +  +P      + +RK++Q + G IKC  +C EI  +   +E
Sbjct: 371 LFEAQAQQYSPRTRPSQTPSRKTSQHSYGGIKCP-VCDEIFPHDQIEE 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,354,402
Number of Sequences: 59808
Number of extensions: 363185
Number of successful extensions: 1100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)