Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0266
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...   141   4e-34
AF357878-1|AAK27716.1|  589|Caenorhabditis elegans receptor-medi...    29   3.2  
AF357877-1|AAK27715.1|  835|Caenorhabditis elegans receptor-medi...    29   3.2  
AF357876-1|AAK27714.1|  576|Caenorhabditis elegans receptor-medi...    29   3.2  
AC006695-15|AAO25981.1|  555|Caenorhabditis elegans Receptor med...    29   3.2  
AC006695-14|AAK73902.2|  576|Caenorhabditis elegans Receptor med...    29   3.2  
AC006695-13|AAF39978.1|  786|Caenorhabditis elegans Receptor med...    29   3.2  
AC006695-12|AAL65796.1|  613|Caenorhabditis elegans Receptor med...    29   3.2  
AC006695-11|AAF39979.1|  835|Caenorhabditis elegans Receptor med...    29   3.2  
AC006695-10|AAF39980.1|  589|Caenorhabditis elegans Receptor med...    29   3.2  
AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical ...    29   4.2  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical...    28   7.3  
AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical...    28   7.3  
Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score =  141 bits (342), Expect = 4e-34
 Identities = 69/106 (65%), Positives = 80/106 (75%)
 Frame = +3

Query: 255 AVCNLASIALNMFVDDNKTYNFKKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRPI 434
           AVCNLASIALN +V   K ++F KL EVTK IT NLNKIIDVNYYPV EA+ SN+RHRPI
Sbjct: 448 AVCNLASIALNRYVTPEKKFDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPI 507

Query: 435 GIGVQGLADAFILMRLPYESPEAIN*INKYLKLFTMGALEASCELA 572
           G+GVQGLAD F+LMR P+ S EA +   +  +     ALEASCELA
Sbjct: 508 GLGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELA 553



 Score =  127 bits (307), Expect = 6e-30
 Identities = 53/85 (62%), Positives = 68/85 (80%)
 Frame = +1

Query: 1   PGLADCWGKEFESLYETYEKENRFVXQVRAQVLWKAIIEAQVETGTPYMLFKDSCNRKSN 180
           PGL DCWG+EFE+LY  YE E R    V+A+ LW+ I+  Q+ETG PY+ +KD+ NRKSN
Sbjct: 363 PGLDDCWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSN 422

Query: 181 QKNLGTIKCSNLCTEIVEYTSDDEV 255
           Q+NLGTIKCSNLCTEI+EY++ DE+
Sbjct: 423 QQNLGTIKCSNLCTEIIEYSAPDEI 447


>AF357878-1|AAK27716.1|  589|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform I protein.
          Length = 589

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 46  KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 82


>AF357877-1|AAK27715.1|  835|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform II protein.
          Length = 835

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 292 KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 328


>AF357876-1|AAK27714.1|  576|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform IV protein.
          Length = 576

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 28  KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 64


>AC006695-15|AAO25981.1|  555|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform f protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 12  KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 48


>AC006695-14|AAK73902.2|  576|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform d protein.
          Length = 576

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 28  KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 64


>AC006695-13|AAF39978.1|  786|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform a protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 243 KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 279


>AC006695-12|AAL65796.1|  613|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform e protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 70  KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 106


>AC006695-11|AAF39979.1|  835|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform b protein.
          Length = 835

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 292 KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 328


>AC006695-10|AAF39980.1|  589|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform c protein.
          Length = 589

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 KKLKEVTKTITENLNKIIDVNYYPVPEAKKSNLRHRP 431
           KK KEV +T++E L KI      P+ E  K +  H P
Sbjct: 46  KKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP 82


>AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical
           protein T13G4.2 protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 124 VETGTPY--MLFKDSCNRKSNQKNLGTIKCS-NLCTEIVE 234
           +E G  Y  + F D C + +   N+GT+ CS ++C  ++E
Sbjct: 53  IERGVYYRPLNFTDHCFKMTPSANIGTMPCSHSMCVTVIE 92


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -3

Query: 685 VPVPIKPGWIFNSTCRTVICPRLAGASVVCIIHSHTFAAS 566
           +P P+  GW+F+ +C          +S  C+++S+ + A+
Sbjct: 725 IPAPVLFGWMFDVSCIKYQSDSCGSSSGGCLMYSNQYLAN 764


>AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3b protein.
          Length = 622

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 564 ELAAKVWECMIHTTDAPASR-GHI 632
           EL+ KVW+C     DAP SR  HI
Sbjct: 361 ELSFKVWQCHGRMVDAPCSRVAHI 384


>AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3a protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 564 ELAAKVWECMIHTTDAPASR-GHI 632
           EL+ KVW+C     DAP SR  HI
Sbjct: 423 ELSFKVWQCHGRMVDAPCSRVAHI 446


>Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical
           protein B0393.9b protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 652 NSTCRTVICPRLAGASVVC 596
           +S+C+TVICP+  G  + C
Sbjct: 20  SSSCKTVICPKQPGKLISC 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,821
Number of Sequences: 27780
Number of extensions: 287541
Number of successful extensions: 840
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)