Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0266
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.68 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 260 YCTSSSDVYSTISVHRLLH 204
           YC+ S  V   +SVHR +H
Sbjct: 124 YCSKSFSVKENLSVHRRIH 142


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +1

Query: 394 FRKQKNLILDID 429
           FR+QKNL++++D
Sbjct: 518 FREQKNLMIELD 529


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
 Frame = +2

Query: 386 LPCSGSKKI*S*T*TYWNRCSRSC*CFYFNAFTLRKSRSY*LNQQIFETIYYGSTRGKL* 565
           LP SGSK   + T T ++R +  C    F+      + S  + +  F   Y G+    + 
Sbjct: 63  LPYSGSKC--TWTITSYHRINLKCSLVEFSENKNCNAGSLTVKKN-FANKYCGNITLNIE 119

Query: 566 TSSKSMGVYDTYDG---CPCK--SRAYYSTTC--GIKNPTRFYG 676
           ++S  M V  T  G   C  +   R   ST C  G KNP+R  G
Sbjct: 120 STSNKMTVILTPPGRFFCEVRPIKRVKDSTNCNCGWKNPSRIVG 163


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 665 WLDF*FHMSYCNMPST 618
           ++DF F + +CNM +T
Sbjct: 300 YIDFLFQVLHCNMENT 315


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 273 RLSCILHFIIRCIF 232
           +LSCIL F+I  +F
Sbjct: 207 QLSCILFFLIPMVF 220


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 95  TCALTCXTNLF 63
           TC L+C TN++
Sbjct: 104 TCVLSCWTNIY 114


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 95  TCALTCXTNLF 63
           TC L+C TN++
Sbjct: 157 TCVLSCWTNIY 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,195
Number of Sequences: 438
Number of extensions: 3958
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)