Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0265
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   2.6  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    29   2.6  
01_06_1618 - 38681729-38683989,38685577-38685796                       28   8.0  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -1

Query: 255 VRLLSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSAD 91
           V  L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D
Sbjct: 33  VASLALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTD 92

Query: 90  SSTTPALAASMHIANTTR 37
           ++T P   A+  +A TTR
Sbjct: 93  TATVPTTTAAARVAATTR 110


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/93 (23%), Positives = 39/93 (41%)
 Frame = +2

Query: 35  LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 214
           +LV   +     S  ++ + A  ++ ++ EKLYN +   +   +      Y   GK  I 
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255

Query: 215 QNVVNNLIIDKRRTPWSTATSCGSATDRKLLES 313
            ++ N +   K    WS A   G A   K +E+
Sbjct: 256 HSIFNGMPA-KDVVSWS-AMIAGYAESSKPMEA 286


>01_06_1618 - 38681729-38683989,38685577-38685796
          Length = 826

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 245 KRRTPWSTATSCGS 286
           +RR PWS+++SCGS
Sbjct: 8   RRRRPWSSSSSCGS 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,701,677
Number of Sequences: 37544
Number of extensions: 374925
Number of successful extensions: 1194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)