Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0265
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 29   3.5  
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   28   8.1  
SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)           28   8.1  

>SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 547 FKYWLYLVLWILKTLCCSP 491
           F+ WL L+LW++  + CSP
Sbjct: 149 FRKWLPLLLWLISLIICSP 167


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 229 QPDH*QETDTMEYCYKLWVGNG 294
           +P H   T T++Y Y+LW G G
Sbjct: 753 RPRHPSSTSTVKYRYRLWTGKG 774


>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -1

Query: 291 VADPQLVAVLHGVRLLSMIRLLTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRS 112
           +A P +   +   +LL     +  F  ++PL  L+YS+  RTA+   P    ++ +  R+
Sbjct: 164 IAAPYVAGWITNKKLLHDQIGVVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRN 222

Query: 111 WLEVSA 94
           W E  A
Sbjct: 223 WKEAGA 228


>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 324 KL*THHGRKLCQDHLQKLQPRSEAR 398
           +L  HHGR+L +DHL    PR   R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 63   SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 203
            +PP+R S    R+     SR    T S+P T +  S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404


>SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)
          Length = 835

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 455 ILNSSVGSSLPCGRTTECLQDPQH 526
           +LN  +G  +PCGR T+C+ + +H
Sbjct: 553 LLNYKIG--VPCGRGTDCVSNAEH 574


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,086,878
Number of Sequences: 59808
Number of extensions: 420814
Number of successful extensions: 1132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)