Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0265
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    26   0.39 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.8  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +2

Query: 44  VFAMCMLAASAGVVELSADTSNQDLEEKLYNS----ILTGDYDSAVRQSLEYESQGKGSI 211
           +FA CM   ++  +++  D     + + L  S    I++ D+D +     EY +  +   
Sbjct: 37  LFARCMGGINSRNMDIEHDPGLAAVLQYLIRSGQLNIISSDHDDSDE---EYAANSQPPR 93

Query: 212 IQNVVNNLIIDKRRTPWSTATSCG--SATDRKLLESTS 319
           I +V N   +DK     +T  +CG     D++ L  TS
Sbjct: 94  ITSVPNTSRLDKSEISLATKQACGFIDNIDKRNLSVTS 131


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 96  ADSSTTPALAASMHIANTTRSFILLGAFQLVP 1
           A+   +  +A  +HI+N T SF L G F++ P
Sbjct: 396 ANKMESSGMAGRVHISNATLSF-LNGEFEVEP 426


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 627 SNGSSSPPSYEKRRPVLHL 683
           S+ S+SP  YE+  P  HL
Sbjct: 37  SSASNSPDHYERFSPSTHL 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,248
Number of Sequences: 438
Number of extensions: 4090
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)