Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0264
(691 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P03688 Cluster: Replication protein O; n=27; root|Rep: ... 131 1e-29
UniRef50_P03042 Cluster: Regulatory protein CII; n=11; root|Rep:... 101 1e-20
UniRef50_P70941 Cluster: 18 protein; n=6; root|Rep: 18 protein -... 92 1e-17
UniRef50_A4W6Y9 Cluster: Phage replication protein O; n=1; Enter... 79 1e-13
UniRef50_P03041 Cluster: Transcriptional activator protein C1; n... 68 2e-10
UniRef50_Q57QY0 Cluster: Putative replication protein O of proph... 61 2e-08
UniRef50_Q5PF52 Cluster: Transcriptional activator-regulatory pr... 53 8e-06
UniRef50_Q8XEZ2 Cluster: Gifsy-1 prophage protein; n=4; Salmonel... 49 9e-05
UniRef50_Q8HA31 Cluster: Replication of DNA; n=3; Caudovirales|R... 49 9e-05
UniRef50_Q2SPC4 Cluster: Phage replication protein O; n=1; Hahel... 47 5e-04
UniRef50_P03687 Cluster: DNA replication protein gp18; n=3; Caud... 46 7e-04
UniRef50_A1RKY1 Cluster: Phage replication protein O; n=3; Shewa... 42 0.014
UniRef50_UPI000045D91C Cluster: hypothetical protein Aple0200160... 38 0.18
UniRef50_Q9KRU2 Cluster: DNA ligase; n=16; Vibrio|Rep: DNA ligas... 36 1.2
UniRef50_P14815 Cluster: Replication protein 15; n=2; root|Rep: ... 34 2.9
UniRef50_Q88G32 Cluster: Phage replication protein O, putative; ... 33 6.6
UniRef50_Q9X406 Cluster: Reductase; n=2; Alphaproteobacteria|Rep... 33 8.7
UniRef50_A6BJ43 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
>UniRef50_P03688 Cluster: Replication protein O; n=27; root|Rep:
Replication protein O - Bacteriophage lambda
Length = 333
Score = 131 bits (317), Expect = 1e-29
Identities = 72/106 (67%), Positives = 82/106 (77%), Gaps = 3/106 (2%)
Frame = +2
Query: 335 MTNTAKILNFGRGNFAGQERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKP 514
MTNTAKILNFGRGNFAGQERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRK
Sbjct: 1 MTNTAKILNFGRGNFAGQERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKT 60
Query: 515 MG---GINQWTESPILNLARLQSYLSNGAMKAKLELVRNRLMPGPG 643
G +++ T+S + + +L N +AKLELVR ++ G
Sbjct: 61 YGWNKPMDRITDSQLSEITKLPVKRCN---EAKLELVRMNIIKQQG 103
>UniRef50_P03042 Cluster: Regulatory protein CII; n=11; root|Rep:
Regulatory protein CII - Bacteriophage lambda
Length = 97
Score = 101 bits (243), Expect = 1e-20
Identities = 49/59 (83%), Positives = 53/59 (89%)
Frame = +1
Query: 112 VDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAILTNKNARRQPSVLNKS 288
VDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAILTNK ++P+ +S
Sbjct: 35 VDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAILTNK---KRPAATERS 90
Score = 74.1 bits (174), Expect = 3e-12
Identities = 50/97 (51%), Positives = 53/97 (54%)
Frame = +3
Query: 9 MVRANKRNEALRIESALLNKIAMLGTEKTAEAVTR**VADQQVEEGLDSKVLNAACCS*M 188
MVRANKRNEALRIESALLNKIAMLGTEKTAEAV + + K
Sbjct: 1 MVRANKRNEALRIESALLNKIAMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEW 60
Query: 189 XXXXXXXXSIGATSCCDSHQ*KRPAATERSEQIQMEF 299
+ KRPAATERSEQIQMEF
Sbjct: 61 GVVDDDMARLARQVAAILTNKKRPAATERSEQIQMEF 97
>UniRef50_P70941 Cluster: 18 protein; n=6; root|Rep: 18 protein -
Salmonella typhimurium
Length = 246
Score = 91.9 bits (218), Expect = 1e-17
Identities = 53/88 (60%), Positives = 63/88 (71%), Gaps = 3/88 (3%)
Frame = +2
Query: 389 ERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKPMG---GINQWTESPILNL 559
ERNVADLDDGYARLSNMLLEAYSGADLTKR FKVLLAILRK G +++ T+S + +
Sbjct: 17 ERNVADLDDGYARLSNMLLEAYSGADLTKRHFKVLLAILRKTYGWNKPMDRITDSQLSEI 76
Query: 560 ARLQSYLSNGAMKAKLELVRNRLMPGPG 643
+L N +AKLELVR ++ G
Sbjct: 77 TKLPVKRCN---EAKLELVRMNIIKQQG 101
>UniRef50_A4W6Y9 Cluster: Phage replication protein O; n=1;
Enterobacter sp. 638|Rep: Phage replication protein O -
Enterobacter sp. 638
Length = 269
Score = 78.6 bits (185), Expect = 1e-13
Identities = 45/103 (43%), Positives = 60/103 (58%)
Frame = +2
Query: 335 MTNTAKILNFGRGNFAGQERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKP 514
M+N A + R + A ER VADLDDG+ RL+NMLLE Y+GADLTKRQFKVLLA+LR
Sbjct: 1 MSNLATVTPI-RPSLAVVERQVADLDDGFTRLANMLLEEYAGADLTKRQFKVLLAVLRLT 59
Query: 515 MGGINQWTESPILNLARLQSYLSNGAMKAKLELVRNRLMPGPG 643
G +A++ +A+++LV L+ G
Sbjct: 60 YGWNKPMDRIANSQIAQIAKLPEKRVSEARVQLVEMNLLVQAG 102
Score = 56.8 bits (131), Expect = 5e-07
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +1
Query: 511 TYGWNKPMDRITDSQLSEITKLPVKRCNESQVRTRQKQADAWAGKRL 651
TYGWNKPMDRI +SQ+++I KLP KR +E++V+ + AG+R+
Sbjct: 59 TYGWNKPMDRIANSQIAQIAKLPEKRVSEARVQLVEMNLLVQAGRRI 105
>UniRef50_P03041 Cluster: Transcriptional activator protein C1;
n=12; root|Rep: Transcriptional activator protein C1 -
Bacteriophage P22
Length = 92
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 3/61 (4%)
Frame = +1
Query: 79 LELRRQRKL*R---VDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAILTN 249
+ +R QRK+ +++SQISRWK D+IPK MLLAVLEWGV D+++A LA++VA +LT
Sbjct: 21 IAIRGQRKVADALGINESQISRWKGDFIPKMGMLLAVLEWGVEDEELAELAKKVAHLLTK 80
Query: 250 K 252
+
Sbjct: 81 E 81
>UniRef50_Q57QY0 Cluster: Putative replication protein O of prophage
CP-933X; n=1; Salmonella choleraesuis|Rep: Putative
replication protein O of prophage CP-933X - Salmonella
choleraesuis
Length = 278
Score = 61.3 bits (142), Expect = 2e-08
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Frame = +2
Query: 335 MTNTAKILNFGRGNFAGQERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKP 514
M NTA+++NF + A +E VADLDDG+ R++N +LEA A L++ Q V +A++RK
Sbjct: 1 MANTAEVINFPVPDVAHKEPRVADLDDGFTRIANEILEAVMHAGLSQHQLLVFMAVMRKT 60
Query: 515 MG--GINQWTESPILNLARLQSYLSNGAMKAKLELVRNRLMPGPG 643
G + W + ++ L L + AK LV+ ++ G
Sbjct: 61 YGFNKKSDWVSNEQFSV--LTGILPHKCSSAKNALVKRGILTQTG 103
>UniRef50_Q5PF52 Cluster: Transcriptional activator-regulatory
protein; n=7; root|Rep: Transcriptional
activator-regulatory protein - Salmonella paratyphi-a
Length = 93
Score = 52.8 bits (121), Expect = 8e-06
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1
Query: 112 VDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAILTNKNA 258
V + Q+SRWK + + SM+LAVLE+G+ D++MA L R++A LT + A
Sbjct: 36 VPEYQVSRWKNGFFSQVSMMLAVLEYGIEDEEMAELTRRLAIYLTKEKA 84
Score = 34.7 bits (76), Expect = 2.2
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 12 VRANKRNEALRIESALLNKIAMLGTEKTAEAV 107
V A K +A RIES LLNK+AM+G + A+A+
Sbjct: 3 VVATKSKKAARIESTLLNKLAMMGQKTFAKAM 34
>UniRef50_Q8XEZ2 Cluster: Gifsy-1 prophage protein; n=4;
Salmonella|Rep: Gifsy-1 prophage protein - Salmonella
typhimurium
Length = 327
Score = 49.2 bits (112), Expect = 9e-05
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +2
Query: 335 MTNTAKILNFGRGNFAGQERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKP 514
M+NTA+I F QE +ADL++GY RL+N + +A +L+ R+F+VL AI+R
Sbjct: 3 MSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCIVELSGREFRVLNAIIRLT 62
Query: 515 MG 520
G
Sbjct: 63 YG 64
Score = 34.3 bits (75), Expect = 2.9
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 511 TYGWNKPMDRITDSQLSEITKLPVKRCNES 600
TYGW+K DRI +S +++ T L VK +E+
Sbjct: 62 TYGWSKKSDRIANSLIADKTTLKVKHVSEA 91
>UniRef50_Q8HA31 Cluster: Replication of DNA; n=3; Caudovirales|Rep:
Replication of DNA - Enterobacteria phage Nil2
Length = 273
Score = 49.2 bits (112), Expect = 9e-05
Identities = 27/85 (31%), Positives = 42/85 (49%)
Frame = +2
Query: 389 ERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKPMGGINQWTESPILNLARL 568
E VAD +DG+ R++N + ++ ADLT RQ KV+LAI+RK G +A +
Sbjct: 17 EHRVADTEDGFMRVANEITDSLLMADLTVRQLKVMLAIMRKTYGFNKPMDRLTNTQIAAM 76
Query: 569 QSYLSNGAMKAKLELVRNRLMPGPG 643
AK +L+ + + G
Sbjct: 77 TGIHHTHVCAAKRQLIERKFLIADG 101
>UniRef50_Q2SPC4 Cluster: Phage replication protein O; n=1; Hahella
chejuensis KCTC 2396|Rep: Phage replication protein O -
Hahella chejuensis (strain KCTC 2396)
Length = 329
Score = 46.8 bits (106), Expect = 5e-04
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +2
Query: 401 ADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKPMG 520
ADLD+GY R++N LL A + DL+ R+FK++ A++RK G
Sbjct: 39 ADLDNGYTRVANELLNALARIDLSGREFKIVNAVMRKTFG 78
>UniRef50_P03687 Cluster: DNA replication protein gp18; n=3;
Caudovirales|Rep: DNA replication protein gp18 -
Bacteriophage P22
Length = 271
Score = 46.4 bits (105), Expect = 7e-04
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +2
Query: 389 ERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKPMGGINQWTESPILNLARL 568
E VA+LDDGY R +N LLEA + LT+ Q +++A+ RK G + A L
Sbjct: 18 EHRVAELDDGYTRTANTLLEAVMLSGLTQHQLLIVMAVWRKTYGYNKKIDWIGNEQFAEL 77
Query: 569 QSYLSNGAMKAKLELVRNRLMPGPGN--GLKERFGE 670
AK EL+R ++ G G+ + E
Sbjct: 78 TGMAPTKCSTAKNELIRMGVLTQVGRQVGMNKNISE 113
>UniRef50_A1RKY1 Cluster: Phage replication protein O; n=3;
Shewanella|Rep: Phage replication protein O - Shewanella
sp. (strain W3-18-1)
Length = 355
Score = 41.9 bits (94), Expect = 0.014
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 401 ADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKPMG 520
ADL+DGY RLSN L++A L+ R+ +V+ A++R+ G
Sbjct: 38 ADLEDGYLRLSNTLVDALCRTKLSDRESRVVFAVIRRTYG 77
>UniRef50_UPI000045D91C Cluster: hypothetical protein Aple02001604;
n=1; Actinobacillus pleuropneumoniae serovar 1 str.
4074|Rep: hypothetical protein Aple02001604 -
Actinobacillus pleuropneumoniae serovar 1 str. 4074
Length = 354
Score = 38.3 bits (85), Expect = 0.18
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 386 QERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKPMGGINQWTESPILNLAR 565
QE +DDGY + N LL A T+RQ+ V+LA+++K + + L
Sbjct: 21 QEAKKVSVDDGYTAIPNELLFAMGRFPFTQRQYAVILAVIQKTLSWRKEMDWICNEQLCE 80
Query: 566 LQSYLSNGAMKA-KLELVRNRLMPGPG 643
L + A K ELVR +++ G
Sbjct: 81 LTGIKGEHKVSAVKNELVRMKVLTQKG 107
>UniRef50_Q9KRU2 Cluster: DNA ligase; n=16; Vibrio|Rep: DNA ligase -
Vibrio cholerae
Length = 282
Score = 35.5 bits (78), Expect = 1.2
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +2
Query: 365 GRGNFAGQERNVAD---LDDGYARLSNMLLEAYSGA-DLTKRQFKVLLAILRKPMGGINQ 532
GRGNF+ ++ V D D + ++S ML + A D +KR + ++ + + I
Sbjct: 93 GRGNFSLVQQTVLDSQPADSAWRKISLMLFDMPDAAGDYSKRYYNLIHLVNSLDLKHIRY 152
Query: 533 WTESPILNLARLQSYLSNGAMKA 601
+PI + A L SYL N + K+
Sbjct: 153 VEHTPIKSEAELLSYLDNISEKS 175
>UniRef50_P14815 Cluster: Replication protein 15; n=2; root|Rep:
Replication protein 15 - Bacteriophage phi-80
Length = 302
Score = 34.3 bits (75), Expect = 2.9
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 511 TYGWNKPMDRITDSQLSEITKL 576
TYGWNK DR+T++ ++E+T L
Sbjct: 59 TYGWNKKQDRVTNTVIAELTGL 80
>UniRef50_Q88G32 Cluster: Phage replication protein O, putative;
n=1; Pseudomonas putida KT2440|Rep: Phage replication
protein O, putative - Pseudomonas putida (strain KT2440)
Length = 276
Score = 33.1 bits (72), Expect = 6.6
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 416 GYARLSNMLLEAYSGADLTKRQFKVLLAILRKPMG 520
G+ R++N L EA GA+L+ R+ +V LAI R G
Sbjct: 12 GFTRMNNDLYEALIGAELSGRELRVALAIHRLTAG 46
>UniRef50_Q9X406 Cluster: Reductase; n=2; Alphaproteobacteria|Rep:
Reductase - Methylosulfonomonas methylovora
Length = 366
Score = 32.7 bits (71), Expect = 8.7
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 449 AYSGADLTKRQFKVLLAILRKPMGGINQWTESPILNLARLQSYLSNGAMKAKLELVRNRL 628
AYS + T+ ++ L + RKP GG W A+++ + G + +N L
Sbjct: 170 AYSMVNFTRSADRIELVVKRKPSGGFGDWLFGATAEGAKVKVFGPLGRATFHADEHKNLL 229
Query: 629 MPGPGNGL 652
M G+G+
Sbjct: 230 MIAGGSGI 237
>UniRef50_A6BJ43 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 826
Score = 32.7 bits (71), Expect = 8.7
Identities = 26/94 (27%), Positives = 41/94 (43%)
Frame = +2
Query: 311 LDLSTGVIMTNTAKILNFGRGNFAGQERNVADLDDGYARLSNMLLEAYSGADLTKRQFKV 490
L+ + G + +N A + N F R + L+ G+A+LS SGA+ K
Sbjct: 649 LNSAIGTLHSNLATLNNATSAQFPTAIRGITALNKGFAQLSGYNDSLVSGANKLKSNSPT 708
Query: 491 LLAILRKPMGGINQWTESPILNLARLQSYLSNGA 592
L+A + G NQ L L S +S+G+
Sbjct: 709 LVAGVNTLQSGTNQLAS----GLNTLGSQMSSGS 738
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,044,454
Number of Sequences: 1657284
Number of extensions: 15504195
Number of successful extensions: 44260
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 42629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44243
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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