Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0264
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 27 1.9
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 27 3.4
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 27 3.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 4.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 4.5
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 26 5.9
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 7.8
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 7.8
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 25 7.8
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 118 KSQISRWKRDWIPKFSMLLAVLEW 189
KS IS W D+ P F+ + VL W
Sbjct: 50 KSSISEWTLDYPPFFAYMECVLSW 73
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 131 AGGRGTGFQSSQCCLLFLNGGSLTTTWLDWRDKL 232
+G R T L + N G+ T +WL+W DK+
Sbjct: 135 SGRRSTTASDILTKLGYKNIGNYTGSWLEWSDKI 168
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 257 AFLLVRIAATCRANRAMSSSTTPHSRTASSIEN 159
AF V + NR SSST P R++SSI N
Sbjct: 224 AFQSVELQKVISNNRLNSSSTPPTPRSSSSIFN 256
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 257 PGGNRAF*TNPDGVLRSLLDLST-GVIMTNTAKILNFGRGNFAGQERNVADLDDGYARLS 433
PG +R T+P+ S LDLS G+ + N ++ F R ++ R +L+
Sbjct: 635 PGNSRGMPTSPNSRNNSALDLSMHGIPLANNSR--QFKRPSYGNMSRPSFELNGSRNPSH 692
Query: 434 NMLLEAYSG 460
L A++G
Sbjct: 693 GSLNTAHAG 701
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 218 NRAMSSSTTPHSRTASSI 165
N+++ +TTPH R ASSI
Sbjct: 304 NQSLDCNTTPHRRNASSI 321
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 336 IMTPVDRSSNDLRTPSGF-VQNARLPPGVFIGENRSNLSRQSSHVVVNDPPFKNSKQH 166
+ +P+D ++L+T ++ LP + E S L S H +VN+PP + + H
Sbjct: 8 LKSPLDEE-DELKTDHEIDLEKGPLPE--YDSEEESTLPPYSDHALVNNPPNTHRENH 62
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 282 VQNARLPPGVFIGENRSNLSRQSSHVVVNDPPFKNSK 172
++ AR+P GVF N NLS + ++ + + K
Sbjct: 610 IKMARIPVGVFFTRNPHNLSVKKIRPIIRSTEYGSPK 646
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 375 TLPDRSVMWQISMMVTPDYQICCLRLIRAQI*PSDS 482
+LP+ + + Q + TP YQ+ +RA++ P DS
Sbjct: 323 SLPESTEVQQKRNIFTPQYQLHINGSLRAKVRPKDS 358
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 464 LRPNKPQAAYLIVWRNHHRDLP 399
++ N + Y+ W N HRD+P
Sbjct: 95 IKANNQDSVYVSDWTNVHRDIP 116
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 690 FNHAWCVSPKRSFKPFPGPGIS 625
F HA + PK+ + FPG GIS
Sbjct: 159 FTHADVLPPKKPYWLFPGLGIS 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,458
Number of Sequences: 5004
Number of extensions: 62627
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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