Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0264
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0006 - 22102663-22103705,22105659-22105671                       31   0.86 
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           29   2.6  
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    29   3.5  
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087...    29   4.6  
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    28   8.0  

>04_04_0006 - 22102663-22103705,22105659-22105671
          Length = 351

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 73  QCLELRRQRKL*RVDKSQISRWKRDWIPKFSMLLAVLEWGV 195
           Q L  RR+R   + +  Q+S +   W+ + +++L  L WGV
Sbjct: 70  QLLIKRRRRNYYQANDEQLSYFNGPWLTRITLILVALWWGV 110


>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -1

Query: 208 CRRQRPPIQEQQAALRTLESSPSSTC*SATYQRVTASAVF 89
           CR Q+ PI+E+     T+ SSP S+C S+ ++ +  + +F
Sbjct: 347 CRDQQIPIEEEAENNTTIVSSPPSSC-SSLHEDIFMAGMF 385


>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
            25826596-25827333,25827712-25827919,25828455-25830409,
            25830868-25830960,25831044-25831100,25831189-25831272,
            25831345-25831437,25831622-25832053,25833593-25833933,
            25834663-25835215
          Length = 2061

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 536  TESPILNLARLQ-SYLSNGAMKAKLELVRNRLMPGPGNGLKERFGETHH 679
            T +PI   AR + S+++ G  K    + RN+  PG G G ++RF E  H
Sbjct: 2009 TWTPIDKRARQKLSFVTYGKEKQSKLVWRNQNSPGVGCGFRKRFREEGH 2057


>02_05_0999 +
           33405982-33408279,33408356-33408466,33408551-33408703,
           33408870-33409033,33409113-33409210,33409296-33409474,
           33409588-33409675,33410285-33410451
          Length = 1085

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = -2

Query: 315 SSNDLRTPSGFVQNARLPPGVFIGENRSNLSRQSSHVVVNDPPFKNSKQH*EL---WNPV 145
           S  D+RTPS  V   +L     IG N S +   +    +N P   +S+++ E+   W+P 
Sbjct: 156 SLGDVRTPSSPVSVEQL---FGIGGNESGIPDIAGLRHLNVPRPSHSQRYGEMDSPWSPA 212

Query: 144 PLPPADLRLINASQLPLSSQFQ 79
            + P    + +    P+S +FQ
Sbjct: 213 YISPGHYGVHDPRDFPISPRFQ 234


>12_01_0752 -
           6798938-6799312,6799628-6799768,6800257-6800325,
           6800407-6800454,6801740-6801836,6801922-6802001,
           6802099-6802170,6802335-6802429,6802853-6802934,
           6805476-6805853
          Length = 478

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 458 PNKPQAAYLIVWRNHHRDLPHYAPVR 381
           P  P+AA+      HHR   +YAPVR
Sbjct: 58  PPPPRAAFFAPPPPHHRPYEYYAPVR 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,222,706
Number of Sequences: 37544
Number of extensions: 458228
Number of successful extensions: 1270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)