Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0264
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23133| Best HMM Match : MgtE_N (HMM E-Value=0.29) 31 0.88
SB_40650| Best HMM Match : PAM2 (HMM E-Value=6.6) 29 3.6
SB_35574| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11) 29 3.6
SB_54069| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 29 4.7
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.7
SB_37989| Best HMM Match : LRR_adjacent (HMM E-Value=3.6) 29 4.7
SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_22877| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_22130| Best HMM Match : MgtE_N (HMM E-Value=0.29) 28 8.2
>SB_23133| Best HMM Match : MgtE_N (HMM E-Value=0.29)
Length = 812
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 223 RQVAAILTNKNARRQPSVLN--KSRWSSEVITGSINRSHYDKYSKNTQLRQ 369
RQ+A ++ NAR+ V+N +R S EVI G IN K T RQ
Sbjct: 15 RQLAEVINGLNARQSGEVINGINTRQSGEVING-INARQSGKVINETNARQ 64
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 220 ARQVAAILTNKNARRQPSVLNK--SRWSSEVITGSINRSHYDKYSKNTQLRQ 369
ARQ ++ NAR+ V+N+ +R S EVI G IN K RQ
Sbjct: 158 ARQSGEVINGINARQSEKVINEINARQSGEVING-INARQSGKVINEINARQ 208
>SB_40650| Best HMM Match : PAM2 (HMM E-Value=6.6)
Length = 290
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 274 RSVAAGRFYW*ESQQLVAPIEPCRRQRPP 188
+S+ G FYW E Q+++ +E RPP
Sbjct: 44 KSIGHGMFYWKELQEILLDMEITLNNRPP 72
>SB_35574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = -2
Query: 447 SSSIFDSLA*PSS--RSATLRSCPAKLPLPKLSIFAVFVIMTPVDRSSNDLRTPSGFVQN 274
S S+FD SS P K + + + F +++ VD + TP G V
Sbjct: 206 SCSLFDDSKQNSSGLELCPTHDTPGKSVMSSVRVKNRFELLSTVDTDITQVITPQGNVNE 265
Query: 273 ARLPPGVFIGENRSNLSRQSSHVVVNDPP 187
PP EN +N+ +S VV N+ P
Sbjct: 266 NASPPENKNTEN-ANIPPMNSGVVNNESP 293
>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
Length = 1461
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 274 RSVAAGRFYW*ESQQLVAPIEPCRRQRPP 188
+S+ G FYW E Q+++ +E RPP
Sbjct: 1251 KSIGHGMFYWKELQEILLDMEITLNNRPP 1279
>SB_54069| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 355
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 567 NLAKLRIGDSVHWFIPP 517
N+A L++G S WF+PP
Sbjct: 259 NVASLKLGSSTFWFLPP 275
>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1308
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 381 AKLPLPKLSIFAVFVIMTPVDRSSNDLR-TPSGFVQNARLPPGVFI 247
A PLP L A+F++MTP S +R +GF A L + I
Sbjct: 698 AGFPLPALLALAIFIVMTPGKSSGRVIRILRAGFPLPALLALAILI 743
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 441 SIFDSLA*PSSRSATLRSCPAKLPLPKLSIFAVFVIMTPV 322
+IF + S +R A PLP L A+ ++MTPV
Sbjct: 709 AIFIVMTPGKSSGRVIRILRAGFPLPALLALAILIVMTPV 748
>SB_37989| Best HMM Match : LRR_adjacent (HMM E-Value=3.6)
Length = 192
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 567 NLAKLRIGDSVHWFIPP 517
N+A L++G S WF+PP
Sbjct: 96 NVASLKLGSSTFWFLPP 112
>SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 567 NLAKLRIGDSVHWFIPP 517
N+A L++G S WF+PP
Sbjct: 96 NVASLKLGSSTFWFLPP 112
>SB_22877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 205 DMARLAR-QVAAILTNKNARRQPSVLNKSRWSSEVITGSINRSHYDKYSKNTQ 360
D+ +L+R + +TN + + +N SR SE+ TG+ N S+Y K TQ
Sbjct: 56 DIIQLSRHENLQSITNYSTVSERQQMNMSRTLSEIATGTANSSYY--LQKTTQ 106
>SB_22130| Best HMM Match : MgtE_N (HMM E-Value=0.29)
Length = 676
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 220 ARQVAAILTNKNARRQPSVLNK--SRWSSEVITGSINRSHYDKYSKNTQLRQ 369
ARQ ++ NAR+ V+N+ +R S EVI G IN K RQ
Sbjct: 82 ARQSGEVINGINARQSEKVINEINARQSGEVING-INARQSGKVINEINARQ 132
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,950,621
Number of Sequences: 59808
Number of extensions: 494667
Number of successful extensions: 1641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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