Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0264
         (691 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009368-1|AAH09368.3|  476|Homo sapiens SWI/SNF related, matrix...    32   2.2  
AF109733-1|AAD23390.1|  453|Homo sapiens SWI/SNF-related, matrix...    32   2.2  
BC001108-1|AAH01108.1|  290|Homo sapiens PIH1 domain containing ...    31   5.1  
AK000650-1|BAA91307.1|  290|Homo sapiens protein ( Homo sapiens ...    30   6.8  

>BC009368-1|AAH09368.3|  476|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 476

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 422 ARLSNMLLEAYSGADLTKRQFKVLLAILRKPMGGINQWTESPILNLARLQSYLSNGAMKA 601
           A L N + E     +  K Q + +L+  R P G IN W +S   +L  +   + N   + 
Sbjct: 379 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEER 438

Query: 602 KLE 610
           + E
Sbjct: 439 RAE 441


>AF109733-1|AAD23390.1|  453|Homo sapiens SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 protein.
          Length = 453

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 422 ARLSNMLLEAYSGADLTKRQFKVLLAILRKPMGGINQWTESPILNLARLQSYLSNGAMKA 601
           A L N + E     +  K Q + +L+  R P G IN W +S   +L  +   + N   + 
Sbjct: 356 ATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEER 415

Query: 602 KLE 610
           + E
Sbjct: 416 RAE 418


>BC001108-1|AAH01108.1|  290|Homo sapiens PIH1 domain containing 1
           protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 524 INQWTESPILNLARLQSYLSNGAMKAKLELVRNRLMPG 637
           +N W E+P L LA +     +GA+   LE+  NRL+ G
Sbjct: 210 LNLWLEAPDLLLAEIDLPKLDGALGLSLEIGENRLVMG 247


>AK000650-1|BAA91307.1|  290|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20643 fis, clone KAT02633. ).
          Length = 290

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 524 INQWTESPILNLARLQSYLSNGAMKAKLELVRNRLMPG 637
           +N W E+P L LA +     +GA+   LE+  NRL+ G
Sbjct: 210 LNLWLEAPDLLLAEVDLPKLDGALGLSLEIGENRLVMG 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,563,801
Number of Sequences: 237096
Number of extensions: 2396787
Number of successful extensions: 5392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5392
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)