Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0264
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    31   1.0  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    31   1.0  
Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U23524-3|AAC46823.2|  257|Caenorhabditis elegans Mirp k channel ...    27   9.6  
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    27   9.6  
AF541978-1|AAO65851.1|  256|Caenorhabditis elegans MPS-1 protein.      27   9.6  

>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 247 NKNARRQPSVLNKSRWSSEVITGS 318
           ++N+RR P +L KS WS E   GS
Sbjct: 168 DRNSRRHPHILYKSEWSQEAKCGS 191


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 247 NKNARRQPSVLNKSRWSSEVITGS 318
           ++N+RR P +L KS WS E   GS
Sbjct: 168 DRNSRRHPHILYKSEWSQEAKCGS 191


>Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 526 KPMDRITDSQLSEITKLPVKRCNESQVRTRQKQADAWAG 642
           KP D    SQ  E+ + P  +C+ S+ R+  +    W+G
Sbjct: 214 KPSDEKWQSQFRELIQKPTWKCSYSETRSLFRTICGWSG 252


>Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 526 KPMDRITDSQLSEITKLPVKRCNESQVRTRQKQADAWAG 642
           KP D    SQ  E+ + P  +C+ S+ R+  +    W+G
Sbjct: 214 KPSDEKWQSQFRELIQKPTWKCSYSETRSLFRTICGWSG 252


>U23524-3|AAC46823.2|  257|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform a protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 208 MARLARQVAAILTNKNARRQPSVLNKSRWSSEVITGSINRSHY 336
           + R   QV A L NKN  + P     S W   +  G+  R HY
Sbjct: 100 LMRAKTQVTAWLVNKNKEKGPEKRKDSEW-KPLPNGTRPRGHY 141


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 208 MARLARQVAAILTNKNARRQPSVLNKSRWSSEVITGSINRSHY 336
           + R   QV A L NKN  + P     S W   +  G+  R HY
Sbjct: 100 LMRAKTQVTAWLVNKNKEKGPEKRKDSEW-KPLPNGTRPRGHY 141


>AF541978-1|AAO65851.1|  256|Caenorhabditis elegans MPS-1 protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 208 MARLARQVAAILTNKNARRQPSVLNKSRWSSEVITGSINRSHY 336
           + R   QV A L NKN  + P     S W   +  G+  R HY
Sbjct: 100 LMRAKTQVTAWLVNKNKEKGPEKRKDSEW-KPLPNGTRPRGHY 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,529
Number of Sequences: 27780
Number of extensions: 368498
Number of successful extensions: 1009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)