Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0263
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    66   8e-10
UniRef50_P30704 Cluster: Outer membrane pore protein E precursor...    33   8.6  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 66.1 bits (154), Expect = 8e-10
 Identities = 31/56 (55%), Positives = 38/56 (67%)
 Frame = +3

Query: 9   GTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP 176
           GTGGLLTP+VAP+L                  YYGN+VAGS++SQLT+AAM+APTP
Sbjct: 19  GTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSVISQLTSAAMLAPTP 74


>UniRef50_P30704 Cluster: Outer membrane pore protein E precursor;
           n=51; Enterobacteriaceae|Rep: Outer membrane pore
           protein E precursor - Klebsiella pneumoniae
          Length = 351

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 357 VKIMHY*IDIDIKDQNQTYLRFNHK 283
           +K MHY  D D KD +QTY+RF  K
Sbjct: 38  IKAMHYFSDYDSKDGDQTYVRFGIK 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,649,181
Number of Sequences: 1657284
Number of extensions: 11631466
Number of successful extensions: 19829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19825
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)