Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0263
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0763 + 5712466-5712721,5714302-5715743                           29   4.6  
08_01_0349 - 3082700-3083407                                           28   6.0  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   8.0  

>06_01_0763 + 5712466-5712721,5714302-5715743
          Length = 565

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 454 TQYESLYF*NNKIKPPSPH 398
           ++Y+S+Y+  N  +PPSPH
Sbjct: 108 SRYQSVYYRKNMTRPPSPH 126


>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 301 VCLILVFNVNVYLIMHYFHAGML 369
           VC +L F +NV  I +Y H G+L
Sbjct: 115 VCFLLAFLLNVQSIRYYSHTGLL 137


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
 Frame = +2

Query: 50  RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 157
           R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 17  RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,794
Number of Sequences: 37544
Number of extensions: 309684
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)