Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0259
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.2  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    25   5.1  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.8  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 430  SRTKTIIPA-SFNDLSNIYKTRISTFLLLGAGC*KQAIKLNMN*YRF 293
            SR   I+ A S++ + +IY  + + ++LLGA   KQ ++L  N  RF
Sbjct: 2367 SRLTFILDATSWDTIPSIYWIKQANYILLGAINAKQPVRLTDNSLRF 2413


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -3

Query: 501 SKQNSEPDPPCTQVIYSLV*LFIYPEPRLLFRQALMI*ATFTKHVFRPFYCLGRDARNRP 322
           SK NS    P   V      +++Y +P +   Q+  +     K V  PF   GR  R+  
Sbjct: 49  SKPNSNQPYPNGPVCIYPPNIYLYAKPTMPIIQSFDVVINVAKEVLHPFRTDGRHYRDSK 108

Query: 321 SN 316
            N
Sbjct: 109 HN 110


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 439 FYLSRTKTIIPASFNDLSNIYKTRISTFL 353
           FY +RT+ I P++F  LS +    +++FL
Sbjct: 334 FYTTRTRIITPSAFKTLS-LTSVMVTSFL 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,880
Number of Sequences: 5004
Number of extensions: 38889
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)