Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0259
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0895 - 29168107-29168229,29168617-29170068                       30   1.3  
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209...    29   1.7  
11_06_0533 + 24734177-24735787                                         27   9.0  
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073...    27   9.0  
01_06_0193 - 27359575-27361962                                         27   9.0  

>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 434 FIPNQDYYSGKL**FKQHLQNTYFDLSTAWGG 339
           F   Q YY G L   + HLQN YF    A+GG
Sbjct: 212 FDHRQPYYIGSL--SESHLQNIYFSYGMAYGG 241


>01_06_0790 +
           32019972-32020101,32020461-32020657,32020790-32020993,
           32021444-32021645,32021798-32021886,32022567-32022662,
           32022710-32022814,32023516-32023556,32023685-32023777,
           32023853-32023970,32024488-32024578,32024693-32024766,
           32025008-32025187,32025643-32025681
          Length = 552

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/77 (22%), Positives = 32/77 (41%)
 Frame = +2

Query: 122 LSALICALSSSWESTAASTRLSVINCFMFLIELSYKPF*RI*YTSXLSLLMNIISPRKSV 301
           +S  IC +   W   A+     V+ C++  ++L+  P   + Y +  +     +   + V
Sbjct: 3   ISGTICVIMEEWSEFASKPVCWVLRCYVRRMQLALYPIFLVAYNTTQNTTSTFMEVVQEV 62

Query: 302 LVHI*FDGLFLASRPKQ 352
           L H    G+  A R  Q
Sbjct: 63  LKHGSTQGVHAAIRSDQ 79


>11_06_0533 + 24734177-24735787
          Length = 536

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/35 (42%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
 Frame = -3

Query: 192 ITLNLVEA-AVLSQLEE-SAQIRAERYVIRETLQD 94
           I+ NL E+ A+++QLEE ++Q+RAER  + + L++
Sbjct: 194 ISANLAESDAMVAQLEEQNSQLRAERGELEKRLEE 228


>07_03_1343 -
           25905475-25905678,25907025-25907167,25907273-25907366,
           25907526-25907687,25907884-25907952,25908631-25908843,
           25909054-25909113,25909294-25909382,25909745-25910063
          Length = 450

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 322 WPVSSIPPQAVERSKYVFCKCCLN 393
           W  S  PP+  +  K  FC+ CLN
Sbjct: 192 WYFSPFPPEYNDSPKLFFCEFCLN 215


>01_06_0193 - 27359575-27361962
          Length = 795

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 113 ITYLSALIC--ALSSSWESTAASTRLSVINCFMFLI 214
           I+++S L+C  A +S W++T   T L V +   FL+
Sbjct: 10  ISFISVLLCCAASASPWQTTGTGTSLQVDHGETFLV 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,675
Number of Sequences: 37544
Number of extensions: 226660
Number of successful extensions: 368
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)