Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0259
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37390| Best HMM Match : MARVEL (HMM E-Value=1.1e-08)                31   0.75 
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)                       27   9.3  

>SB_37390| Best HMM Match : MARVEL (HMM E-Value=1.1e-08)
          Length = 196

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 95  SCKVSLITYLSALICALSSSWESTAASTRLSVINCFMFLIELSY 226
           S  V +    S+L+ + S  W +  AS     ++ F+FL+E+ Y
Sbjct: 120 SVGVFIFLVASSLVASYSYIWSALKASAAFGFVSAFLFLVEVVY 163


>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
          Length = 853

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 25  IKYFLIYLC*FNYISSTSAMKQLVLQSFPDNVSLCP 132
           +K+ +I++C  NYIS+   + +LV   F  N S+ P
Sbjct: 494 VKFLIIFVCSPNYISNPYLVAKLVEVIFVVNPSIQP 529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,301,498
Number of Sequences: 59808
Number of extensions: 269178
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)