Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0259
         (518 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF461041-1|AAL67803.1| 2316|Homo sapiens AF15q14 isoform 2 protein.    30   4.2  
AF173994-1|AAM45143.1| 2342|Homo sapiens AF15q14 protein.              30   4.2  
AB046790-1|BAB13396.1| 1360|Homo sapiens KIAA1570 protein protein.     30   4.2  

>AF461041-1|AAL67803.1| 2316|Homo sapiens AF15q14 isoform 2 protein.
          Length = 2316

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 368  YFDLSTAWGGMLETGHQIKYELVQISLVI-*CSLKVKAXMYIKFFKKVYSLIRLKT*NN* 192
            Y +   +W     T HQ+   L + SLV+  C L  +   Y+K +   Y+L+ +   NN 
Sbjct: 2179 YVEEKESWKKTCTTQHQLPKMLEEFSLVVHHCRLLGEEIEYLKRWGPNYNLMNIDINNNE 2238

Query: 191  SHLILSKPPCF 159
              L+ S    F
Sbjct: 2239 LRLLFSSSAAF 2249


>AF173994-1|AAM45143.1| 2342|Homo sapiens AF15q14 protein.
          Length = 2342

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 368  YFDLSTAWGGMLETGHQIKYELVQISLVI-*CSLKVKAXMYIKFFKKVYSLIRLKT*NN* 192
            Y +   +W     T HQ+   L + SLV+  C L  +   Y+K +   Y+L+ +   NN 
Sbjct: 2205 YVEEKESWKKTCTTQHQLPKMLEEFSLVVHHCRLLGEEIEYLKRWGPNYNLMNIDINNNE 2264

Query: 191  SHLILSKPPCF 159
              L+ S    F
Sbjct: 2265 LRLLFSSSAAF 2275


>AB046790-1|BAB13396.1| 1360|Homo sapiens KIAA1570 protein protein.
          Length = 1360

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 368  YFDLSTAWGGMLETGHQIKYELVQISLVI-*CSLKVKAXMYIKFFKKVYSLIRLKT*NN* 192
            Y +   +W     T HQ+   L + SLV+  C L  +   Y+K +   Y+L+ +   NN 
Sbjct: 1223 YVEEKESWKKTCTTQHQLPKMLEEFSLVVHHCRLLGEEIEYLKRWGPNYNLMNIDINNNE 1282

Query: 191  SHLILSKPPCF 159
              L+ S    F
Sbjct: 1283 LRLLFSSSAAF 1293


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,050,650
Number of Sequences: 237096
Number of extensions: 1253234
Number of successful extensions: 1517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)