Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0259
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ...    28   3.5  

>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = +2

Query: 95  SCKVSLITYLSALICALSSSWESTAASTRLSVINCFMFLIELSY--KPF*RI*YTSXLSL 268
           S  V L+T +S LI ++SS+W S       ++ +  M+LI + +    +  I Y   +++
Sbjct: 68  SMYVLLLTIVSCLI-SISSAWSSPDLWLAETIFSLLMYLIAILFFMYTYLMIIYPKPINM 126

Query: 269 LMNIISPRKSVLV 307
           L+ I++ RK+ LV
Sbjct: 127 LIMILN-RKTSLV 138


>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
           protein T01A4.1a protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 169 GFDKIKCDQLFHVFNRIKL*TFLKNLIYIXAFTF--NEHYITKEICTSSYLI*W 324
           G+DK KC Q + +   + + +FL  L+ +  F F    + + +E+   S+ I W
Sbjct: 456 GYDKSKCPQGYPLHVYLLMGSFLLILVLVGLFIFFWRRYKLEQELAAMSWKIRW 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,844,349
Number of Sequences: 27780
Number of extensions: 209621
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)