Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0259
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41460.1 68418.m05035 fringe-related protein strong similarit...    31   0.35 
At4g23490.1 68417.m03384 fringe-related protein  + weak similari...    28   4.3  

>At5g41460.1 68418.m05035 fringe-related protein strong similarity
           to unknown protein (pir||T13026) similarity to predicted
           proteins + similar to hypothetical protein GB:AAC23643
           [Arabidopsis thaliana] + weak similarity to Fringe
           [Schistocerca gregaria](GI:6573138);Fringe encodes an
           extracellular protein that regulates Notch signalling.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = -1

Query: 425 NQDYYSGKL**FKQHLQNTYFDLSTAWGGMLETGHQIKYEL 303
           NQ YY G L   + HLQN YF    A+GG    G  I Y L
Sbjct: 231 NQMYYIGSL--SESHLQNIYFSYGMAYGG---GGFAISYPL 266


>At4g23490.1 68417.m03384 fringe-related protein  + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 526

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 422 QDYYSGKL**FKQHLQNTYFDLSTAWGGMLETGHQIKYELVQ 297
           Q YY G L   + HLQN +F    A+GG    G  I Y L +
Sbjct: 233 QMYYIGSL--SESHLQNIFFSYGMAYGG---GGFAISYPLAK 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,110,710
Number of Sequences: 28952
Number of extensions: 194348
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)