Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0258
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 36 0.007
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 32 0.065
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 29 0.61
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.81
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 28 1.1
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 28 1.4
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 28 1.4
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 1.9
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.5
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 7.5
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 25 9.9
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 18 INSMPTFVFVKNGKKLDEFSGAN 86
+ +MPTFVF +NGK++D +GAN
Sbjct: 72 VKAMPTFVFFENGKQIDMLTGAN 94
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 32.3 bits (70), Expect = 0.065
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGAN 86
A +++MP+F KNG+K++E GAN
Sbjct: 65 AEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.61
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 9 SYNINSMPTFVFVKNGKKLDEFSGAN 86
S+++N++P FV + K L SGAN
Sbjct: 68 SFDVNAVPLFVLIHGAKVLARISGAN 93
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.81
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 243 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 154
KFI D +N F+ I Y F F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 263 TQKLISSNSLQTLKTFFIHLLKTYTCFFFLIP 168
T SS +L +F+ L++ + CFFF+ P
Sbjct: 45 TSYWFSSGPFISLSFWFLSLVRGFVCFFFMFP 76
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 522 QKFLKHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 406
+K K DG+ S GE++H + ++ KN+ + I+ L
Sbjct: 297 RKIQKLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSG 80
+ Y+I PT KNGK++ ++SG
Sbjct: 88 SEYSIRGYPTLNVFKNGKQISQYSG 112
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 264 NTKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 145
+++ N ++TD +NIF +F+ N + F + L I C
Sbjct: 72 SSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 474 IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 385
+G I HL K D+N K ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = -3
Query: 288 IFCIPEAANTKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SLF 124
I+ + T + + + +++ F S ++N+ FF S G C+ LF
Sbjct: 27 IYFLTSKKITNLGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFLF 81
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 257 KLISSNSLQTLKTFFIHLLKTY 192
KL+SSN+LQ + F+ ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 279 CKKYW-FCCNQTIQ*IKLDIS**FTTQTVFLFWFFLPSGC*GTLMYELLCFYFYF 440
C++ W + + +K + F + +WF + GT M ++ YFYF
Sbjct: 76 CRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTEMAQITTPYFYF 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,840
Number of Sequences: 5004
Number of extensions: 53669
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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