Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0258
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 36 0.029
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 35 0.051
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 35 0.051
05_01_0489 - 4077365-4077502,4078105-4078227,4079019-4079135,407... 34 0.090
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 33 0.21
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 33 0.27
05_05_0229 - 23457438-23457629,23457706-23457828,23457913-234580... 33 0.27
12_01_1027 + 10529545-10529777,10530269-10530668 32 0.36
04_04_0598 - 26514226-26514545,26516080-26516302 29 4.5
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 28 5.9
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 35.9 bits (79), Expect = 0.029
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGANVD 92
YN+ +MPTF+F+K+G + D+ GA D
Sbjct: 77 YNVEAMPTFLFIKDGAEADKVVGARKD 103
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 35.1 bits (77), Expect = 0.051
Identities = 12/25 (48%), Positives = 22/25 (88%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGAN 86
+N++S+P+F FV+NGK++D+ GA+
Sbjct: 708 WNVSSVPSFFFVRNGKEIDKVVGAD 732
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 35.1 bits (77), Expect = 0.051
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGAN 86
+S++I + PTF F+KNG+++D+ GAN
Sbjct: 590 SSWDIRATPTFFFLKNGEQVDKLVGAN 616
>05_01_0489 -
4077365-4077502,4078105-4078227,4079019-4079135,
4079243-4079263
Length = 132
Score = 34.3 bits (75), Expect = 0.090
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGAN 86
+S++I + PTF F+KN K++D+ GAN
Sbjct: 91 SSWDIRATPTFFFIKNEKQVDKLVGAN 117
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 9 SYNINSMPTFVFVKNGKKLDEFSGAN 86
+Y + ++P FVF+K GK +D GAN
Sbjct: 68 AYGVTAVPYFVFLKEGKTVDTLEGAN 93
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +3
Query: 12 YNINSM-PTFVFVKNGKKLDEFSGAN 86
Y+I + PTF FVK+G+K+D+ GAN
Sbjct: 1047 YDIEGIVPTFFFVKDGEKIDKIPGAN 1072
>05_05_0229 -
23457438-23457629,23457706-23457828,23457913-23458026,
23462062-23462597,23463258-23464545
Length = 750
Score = 32.7 bits (71), Expect = 0.27
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGAN 86
Y++ + PTF+F+KN +++D+ G N
Sbjct: 706 YDVRATPTFIFMKNNEEIDKLVGGN 730
>12_01_1027 + 10529545-10529777,10530269-10530668
Length = 210
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 9 SYNINSM-PTFVFVKNGKKLDEFSGA 83
SY++N + PTF FVK G+K+D GA
Sbjct: 52 SYDVNGVVPTFTFVKAGQKIDMIQGA 77
>04_04_0598 - 26514226-26514545,26516080-26516302
Length = 180
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGA 83
+ Y + S+PT + KNG+K D GA
Sbjct: 139 SQYGVRSIPTMMIFKNGEKKDAVIGA 164
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGANVD 92
+++ +MPTF+F+K G D GA D
Sbjct: 83 FSVEAMPTFLFMKEGDVKDRVVGAMKD 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,341
Number of Sequences: 37544
Number of extensions: 261837
Number of successful extensions: 504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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